PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G11860.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 286aa MW: 28647.7 Da PI: 7.4335

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G11860.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.8e-38	26	82	4	60
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++cprCds+ntkfCyynny+lsqPr+fCkaCrryWtkGG lrnvPvGgg+rk k+ OGLUM06G11860.1 26 EEVRCPRCDSSNTKFCYYNNYNLSQPRHFCKACRRYWTKGGLLRNVPVGGGCRKPKR 82 5789**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.1E-33	27	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.087	28	82	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-23	29	77	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MQEFHPVPGL AGRLFGGAAA AAVAVEEVRC PRCDSSNTKF CYYNNYNLSQ PRHFCKACRR 60 YWTKGGLLRN VPVGGGCRKP KRPAPPPSSS FTGGGGGGGC GHRDSKSARS AGGAGDGSGS 120 TASATATPAA APASSNTLSA AVSQPSSVDA LSPPPAPMFA DQATAFASLF APPPPPPSQA 180 LPAFASFTAQ PKAEEDVADA PALAATEQHR SSSAASFAAH SISPPFAAAR SSDGPAAAAA 240 AAAADWAPPT AVLDAGMFDL AGAIGGDTSY WNAASWTDHD GTIYLP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004791	0.0	AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641761.1	1e-123	dof zinc finger protein 4-like
TrEMBL	A0A0E0A870	0.0	A0A0E0A870_9ORYZ; Uncharacterized protein
STRING	OGLUM06G11860.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	3e-29	Dof family protein