PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G12660.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 378aa    MW: 40983.6 Da    PI: 4.859
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G12660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.3e-07445540
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      C+ ++e++   +C+++   lC +C  + H+       Ht++
  OGLUM06G12660.1  4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                     6*****************************657888889876 PP
2zf-B_box24.55.8e-084789541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+++ ++++   C   +  lC++C  ++H+       H++++
  OGLUM06G12660.1 47 LCDRCASQPAMVRCLVENASLCQNCDWNGHSAgssaagHKRQT 89
                     7*****************************6688899999876 PP
3CCT652.1e-22321364144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  OGLUM06G12660.1 321 RDDAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 364
                      899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.94147IPR000315B-box-type zinc finger
SMARTSM003361.0E-10147IPR000315B-box-type zinc finger
CDDcd000216.01E-8447No hitNo description
PROSITE profilePS501198.8594390IPR000315B-box-type zinc finger
PfamPF006432.2E-54790IPR000315B-box-type zinc finger
CDDcd000218.06E-64790No hitNo description
SMARTSM003360.274890IPR000315B-box-type zinc finger
PfamPF062033.5E-17321363IPR010402CCT domain
PROSITE profilePS5101715.388321363IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LVENASLCQN CDWNGHSAGS SAAGHKRQTI NCYSGCPSSS ELSKIWTFVS DIPNVAPEPN  120
CEQGISMMSI SDSGVSNQDN AAGDSSLLDI ASATLMSDLG TAGKPKSLIG SSSEAGVNLL  180
PLATDQMAGS VDSTSAKVPY TADQDMFSKD SIYEDFCVDD VDLSFENYEE LFGTSHIQTE  240
QLFDDAGIDS YFESKEIPSG NSDEQPKLMQ PVTSNAVSAD SGMSIPGAKD YQDCGVSPVL  300
LMGEPPWHPP GPEGSFAGAT RDDAITRYKE KKKRRKFDKK IRYASRKARA DVRKRVKGRF  360
VKAGEAYDYD PLCETRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330334KKKRR
2330335KKKRRK
3331335KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0988650.0AK098865.1 Oryza sativa Japonica Group cDNA clone:J013001A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644311.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
SwissprotQ9SSE51e-117COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0E0A8H60.0A0A0E0A8H6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PWP20.0A0A0E0PWP2_ORYRU; Uncharacterized protein
STRINGOGLUM06G12660.20.0(Oryza glumipatula)
STRINGORUFI06G12310.20.0(Oryza rufipogon)
STRINGOS06T0298200-010.0(Oryza sativa)
STRINGONIVA06G13380.10.0(Oryza nivara)
STRINGOBART06G11710.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.44e-84CONSTANS-like 9