PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G17590.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 621aa    MW: 69960.9 Da    PI: 6.608
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G17590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.6e-08125147527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C +++r+G CkyG +C+F+H+p
  OGLUM06G17590.1 125 DCLHYLRFGRCKYGMNCRFNHPP 147
                      699******************96 PP
2zf-CCCH35.12.3e-11187212126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++t lC++++  G+Ck+G++CkF+H+
  OGLUM06G17590.1 187 PGTGLCSYYMNRGICKFGSNCKFHHP 212
                      5799*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.7679106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.45179107IPR000571Zinc finger, CCCH-type
PfamPF146080.5884105No hitNo description
PROSITE profilePS5010313.882120148IPR000571Zinc finger, CCCH-type
SMARTSM003560.0079120147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5122149IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-5125147IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5186213IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939186214IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6187213IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-9188212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5189211IPR000571Zinc finger, CCCH-type
SuperFamilySSF483714.6E-31397578IPR016024Armadillo-type fold
PfamPF028542.3E-22403558IPR003890MIF4G-like, type 3
SMARTSM005430.0056403617IPR003890MIF4G-like, type 3
Gene3DG3DSA:1.25.40.1803.5E-30404560IPR016021MIF4G-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MQILCECCSS DHRSSSTPMA TTSSSAADPA AAAISLTPSH QHASSTVTTL DDRRPAGTSS  60
SAGETEPKAA VEPQEYPRRP GWPDCSYYVE FGSCKFGMGC LYNHPAKHAG GCDKLEHPQR  120
PGEHDCLHYL RFGRCKYGMN CRFNHPPDRV PQRQVYFPWK ACHCHHSEGK SEAEQVKLNF  180
IGLPLRPGTG LCSYYMNRGI CKFGSNCKFH HPNPGSGHEK WDGSLQTNQI SSGVNIYSVL  240
DHGELNEQPV PSKDGFQPAE QIRYTRDQLL QLRETVDVPK DIMKLIQDIN VELRGEDESW  300
APNETNYVPA LSYKRFEETD SHDWHSRSSQ NPVVVEEEKF RDDTREAKEP YALGWKQKQF  360
NNQDRKSFQS DSKTQASPTL ALHKAEDPWS IRRGTTPEKY KVLRTVKGIL NLSTPEKFDI  420
LKGQLIEAGI TRTDILKDVI DLILEKAVAE PTLCPMYAQL CSYLNENLTA FPPKDTHCEQ  480
ITFKQALSDK CQQAFEIARN VRADIYKLTG RDQEMERRDK ERLVKHQILG KICLIRDLLK  540
QKMVPDKIVH QIAQAVTDCE NFHFEPLENV DLLNIIFDGV LDSVLAGTGA NKIVNAIVGT  600
EKCSIASNDV GIIDKDEPEK S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iul_A1e-1440255822182Eukaryotic translation initiation factor 4 gamma 2
4iul_B1e-1440255822182Eukaryotic translation initiation factor 4 gamma 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194530.0AK119453.1 Oryza sativa Japonica Group cDNA clone:001-133-D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641846.10.0zinc finger CCCH domain-containing protein 42 isoform X1
SwissprotQ5Z5Q30.0C3H43_ORYSJ; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0E0AA890.0A0A0E0AA89_9ORYZ; Uncharacterized protein
STRINGOGLUM06G17590.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143301322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.13e-29C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]