PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G17590.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 504aa    MW: 56397 Da    PI: 6.4233
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G17590.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-08125147527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C +++r+G CkyG +C+F+H+p
  OGLUM06G17590.2 125 DCLHYLRFGRCKYGMNCRFNHPP 147
                      699******************97 PP
2zf-CCCH35.41.8e-11187212126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++t lC++++  G+Ck+G++CkF+H+
  OGLUM06G17590.2 187 PGTGLCSYYMNRGICKFGSNCKFHHP 212
                      5799*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.45179107IPR000571Zinc finger, CCCH-type
SMARTSM003560.7679106IPR000571Zinc finger, CCCH-type
PfamPF146080.4584105No hitNo description
PROSITE profilePS5010313.882120148IPR000571Zinc finger, CCCH-type
SMARTSM003560.0079120147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5122149IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-5125147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939186214IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5186213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-6187213IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-9188212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-5189211IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MQILCECCSS DHRSSSTPMA TTSSSAADPA AAAISLTPSH QHASSTVTTL DDRRPAGTSS  60
SAGETEPKAA VEPQEYPRRP GWPDCSYYVE FGSCKFGMGC LYNHPAKHAG GCDKLEHPQR  120
PGEHDCLHYL RFGRCKYGMN CRFNHPPDRV PQRQVYFPWK ACHCHHSEGK SEAEQVKLNF  180
IGLPLRPGTG LCSYYMNRGI CKFGSNCKFH HPNPGSGHEK WDGSLQTNQI SSGVNIYSVL  240
DHGELNEQPV PSKDGFQPAE QIRYTRDQLL QLRETVDVPK DIMKLIQDIN VELRGEDESW  300
APNETNYVPA LSYKRFEETD SHDWHSRSSQ NPVVVEEEKF RDDTREAKEP YALGWKQKQF  360
NNQDRKSFQS DSKTQASPTL ALHKAEDPWS IRRGTTPEKY KVLRTVKGIL NLSTPEKFDI  420
LKGQLIEAGI TRTDILKAVT DCENFHFEPL ENVDLLNIIF DGVLDSVLAG TGANKIVNAI  480
VGTEKCSIAS NDVGIIDKDE PEKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194530.0AK119453.1 Oryza sativa Japonica Group cDNA clone:001-133-D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641846.10.0zinc finger CCCH domain-containing protein 42 isoform X1
SwissprotQ0DBW81e-179C3H42_ORYSJ; Zinc finger CCCH domain-containing protein 42
TrEMBLA0A0E0AA900.0A0A0E0AA90_9ORYZ; Uncharacterized protein
STRINGOGLUM06G17590.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-29C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]