PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G19330.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 227aa    MW: 23834.5 Da    PI: 4.3416
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G19330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.58e-095281235
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgk 35
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+
  OGLUM06G19330.1 52 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGT 81
                     69****998.**********843...6*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.85352110IPR001471AP2/ERF domain
SMARTSM003807.9E-652112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-135281IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-85281IPR016177DNA-binding domain
CDDcd000181.76E-125381No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MPEYELAACS PASPLSSASS TSTPPSPGGE AAARCGEKRG RGGGGGGGRH PTYRGVRMRA  60
WGKWVSEIRE PRKKSRIWLG TQCLDPRGSW CARAAAMALY AAVPAPPSPP PPLMPPQASP  120
SEAARVHALV GQVDQDDDDD DELEEIVELP PIDELDAAAE LVFVSSGAST FHDDPAADQP  180
WYDQPAAWLQ DGGGGGIAVH DALGFELDHV WADGVVASGF GALLWNM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14048RGGGGGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036820.0AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193635.17e-35ethylene-responsive transcription factor ERF039-like
TrEMBLA0A0E0AAT51e-160A0A0E0AAT5_9ORYZ; Uncharacterized protein
STRINGOGLUM06G19330.11e-161(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.17e-17ERF family protein