PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G19920.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 297aa    MW: 32676.5 Da    PI: 5.3021
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G19920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.82.6e-31101022102
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      Fl k++e++ed++++ ++sw  +  nsfvv+d++ fa ++Lp +Fkh nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++ll
  OGLUM06G19920.1  10 FLVKTFEMVEDPATDAVVSWGgAARNSFVVWDPHAFAARLLPLHFKHANFSSFLRQLNTYGFRKVSADR---------WEFANEDFLGGQRHLL 94 
                      9********************9899******************************************99.........**************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  95 ekikrkks 102
                       +i+r+++
  OGLUM06G19920.1  95 ANIRRRRR 102
                      *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.54E-306100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.2E-516100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.0E-337100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-161033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-2710100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-164961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-166274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGVGAAVAPF LVKTFEMVED PATDAVVSWG GAARNSFVVW DPHAFAARLL PLHFKHANFS  60
SFLRQLNTYG FRKVSADRWE FANEDFLGGQ RHLLANIRRR RRGAGTGSTS PRTVNGGAGG  120
SEGEVERLRR DKEALARELA RLRRQQQEAR AQLLDMERRV RGTERRQEQC TAFLARALRS  180
PDVLDNIARR HAAAVERKKR RMLAAAADDD GLTFEALALA AAADTSHSTG GAVTTDMIWY  240
ELLGEEQAEI DIEVDQLVAS ASAAADTASE AEPWEEMGEE EVQELVQQID CLASPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-21110016129Heat shock factor protein 1
5d5v_B5e-21110016129Heat shock factor protein 1
5d5v_D5e-21110016129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054560.0AP005456.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0513E02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881831.11e-166putative heat stress transcription factor A-6a
RefseqXP_025881832.11e-166putative heat stress transcription factor A-6a
RefseqXP_025881833.11e-166putative heat stress transcription factor A-6a
SwissprotQ5Z6A41e-167HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLA0A0E0AB100.0A0A0E0AB10_9ORYZ; Uncharacterized protein
STRINGOGLUM06G19920.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-50heat shock transcription factor A2