PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G21530.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 590aa    MW: 65022.9 Da    PI: 5.5928
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G21530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-18157204148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ed++l ++v+ +G g+W+++ r  g++R++k+c++rw ++l
  OGLUM06G21530.1 157 KGPWTPDEDKRLREYVEAHGEGNWNRVQRNAGLNRCGKSCRLRWANHL 204
                      79******************************************9986 PP
2Myb_DNA-binding41.92.3e-13210253146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+e +++++  lG++ W++ a+ ++ gRt++++k++w++
  OGLUM06G21530.1 210 KGPFSKEEEEMIIKLHLWLGNK-WAKMANSLP-GRTDNEIKNFWNT 253
                      79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.639152208IPR017930Myb domain
SuperFamilySSF466893.44E-30154251IPR009057Homeodomain-like
SMARTSM007175.2E-16156206IPR001005SANT/Myb domain
PfamPF002495.2E-17157204IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-24158211IPR009057Homeodomain-like
CDDcd001675.99E-12159204No hitNo description
PROSITE profilePS5129416.24209259IPR017930Myb domain
SMARTSM007171.9E-12209257IPR001005SANT/Myb domain
PfamPF002494.8E-12210253IPR001005SANT/Myb domain
CDDcd001671.66E-9212253No hitNo description
Gene3DG3DSA:1.10.10.601.0E-23212257IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MQPDSTDRLA GRHAGCSERA ADTKQMIIFR KFTTKSKKHS MQYCKPRLHR WIVPNPNGKP  60
FYYSTSLSAA AAAAHLVSTP GSSPMEEEEA ARLAGSQGES PAMLHPNGDG DGDGDGGDDE  120
GDASGGEEEQ GGVARAGVRR RGGGGRVRVR GRIPLKKGPW TPDEDKRLRE YVEAHGEGNW  180
NRVQRNAGLN RCGKSCRLRW ANHLKPDLKK GPFSKEEEEM IIKLHLWLGN KWAKMANSLP  240
GRTDNEIKNF WNTRCKRIQR TGEPLYPKEF NHFKLTDLEV MNCESPDESR AKKRTNEVLQ  300
GNGQSYKEVF FNNLDYSRPE NYIRPNCVTP NSLPVDATSP FGSAIATQDQ SVPFGSAIVS  360
GHPILDGNFS TSGTIQRPMN VELPSLQYPN YDFNNNNAWS YHDPLGHPID QVDFGSLRSE  420
YLSPNNNGLL DALVHGGHGQ GELANSQGSF DACFPRVQCN QVIQSNAFSL SSSFPIIGDD  480
LLENSCHAFV GINNNASSLF LDSQPPPLVD PTFWRHDVSL EPNLPVYCQF NEELPPSNEQ  540
FAKDADDAFG HGGLSDETNL AAAGQGDEHD LENPWASMPG ACDIPDFPSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-271552575106B-MYB
1h8a_C4e-2715525725126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2120750.0AB212075.1 Oryza sativa Japonica Group mRNA for GAMYB-like1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641123.10.0transcription factor MYB101
TrEMBLA0A0E0ABM60.0A0A0E0ABM6_9ORYZ; Uncharacterized protein
STRINGOGLUM06G21530.30.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.18e-55myb domain protein 101