PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G21530.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 564aa    MW: 61987.7 Da    PI: 5.9856
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G21530.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-18172219148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ed++l ++v+ +G g+W+++ r  g++R++k+c++rw ++l
  OGLUM06G21530.2 172 KGPWTPDEDKRLREYVEAHGEGNWNRVQRNAGLNRCGKSCRLRWANHL 219
                      79******************************************9986 PP
2Myb_DNA-binding422.1e-13225268146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+e +++++  lG++ W++ a+ ++ gRt++++k++w++
  OGLUM06G21530.2 225 KGPFSKEEEEMIIKLHLWLGNK-WAKMANSLP-GRTDNEIKNFWNT 268
                      79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.639167223IPR017930Myb domain
SuperFamilySSF466893.22E-30169266IPR009057Homeodomain-like
SMARTSM007175.2E-16171221IPR001005SANT/Myb domain
PfamPF002494.9E-17172219IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-24173226IPR009057Homeodomain-like
CDDcd001675.53E-12174219No hitNo description
PROSITE profilePS5129416.24224274IPR017930Myb domain
SMARTSM007171.9E-12224272IPR001005SANT/Myb domain
PfamPF002494.6E-12225268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-24227272IPR009057Homeodomain-like
CDDcd001671.54E-9227268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MQPDSTDRLA GRHAGCSERA ADTKQMIIFR KFTTKSKKHS MQYCKPRLHS PFRPRTRAIV  60
IGGPLLLASS SLLRLVYYST SLSAAAAAAH LVSTPGSSPM EEEEAARLAG SQGESPAMLH  120
PNGDGDGDGD GGDDEGDASG GEEEQGGVAR AGVRRRGGGG RVRVRGRIPL KKGPWTPDED  180
KRLREYVEAH GEGNWNRVQR NAGLNRCGKS CRLRWANHLK PDLKKGPFSK EEEEMIIKLH  240
LWLGNKWAKM ANSLPGRTDN EIKNFWNTRC KRIQRTGEPL YPKEFNHFKL TDLEVMNCES  300
PDESRAKKRT NEVLQGNGQS YKEVFFNNLD YSRPENYIRP NCVTPNSLPV DATSPFGSAI  360
ATQDQSVPFG SAIVSGHPIL DGNFSTSGTI QRPMNVELPS LQYPNYDFNN NNAWSYHDPL  420
GHPIDQVDFG SLRSEYLSPN NNGLLDALVH GGHGQGELAN SQGSFDACFP RVQCNQVIQS  480
NAFSLSSSFP IIGDDLLENI YCQFNEELPP SNEQFAKDAD DAFGHGGLSD ETNLAAAGQG  540
DEHDLENPWA SMPGACDIPD FPSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-271702725106B-MYB
1h8a_C2e-2717027225126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2120750.0AB212075.1 Oryza sativa Japonica Group mRNA for GAMYB-like1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641123.10.0transcription factor MYB101
TrEMBLA0A0E0ABM70.0A0A0E0ABM7_9ORYZ; Uncharacterized protein
STRINGOGLUM06G21530.30.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.25e-55myb domain protein 101