PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G21860.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 452aa    MW: 46728.6 Da    PI: 6.7387
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G21860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS261.23.7e-8014344887374
             GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                      + P+l+f+hltaNqaIleav+g++rvHi+D+d+ +G+QWp+Llqa+a+R+    gpp++R+Tg g+    ++++l +tg+rL+ fA+++++pf+
  OGLUM06G21860.1 143 IAPFLRFAHLTANQAILEAVDGARRVHILDLDAVHGVQWPPLLQAIAERAdpaLGPPEVRVTGAGA----DRDTLLRTGNRLRAFARSIHLPFH 232
                      78************************************************66666***********....9*********************** PP

             GRAS 178 fnvl...................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse. 251
                      f++l                   +a++ ++     L+++p+E+laVn+v+ lh+l       ++e  ++Lk vk +sP vv+++e+ea  +++ 
  OGLUM06G21860.1 233 FTPLllsctttaphhvagtstgaAATASTAAAATGLEFHPDETLAVNCVMFLHNLA-----GHDELAAFLKWVKAMSPAVVTIAEREAGGGGGg 321
                      ****99999998888777776644444455577889*******************8.....2233567*******************9996666 PP

             GRAS 252 ......sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                            ++ +r+  a+++ysa+f++lea++p+ s+er  vE+e+lgrei+ +v  +g +     +  e+W  + ++aGF + pls +a++qa+l
  OGLUM06G21860.1 322 ggdhidDLPRRVGVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIEAAVGPSGGR---WWRGIERWGGAARAAGFAARPLSAFAVSQARL 412
                      8899999***********************************************99998...78899*************************** PP

             GRAS 340 llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      llr ++ s+gy v+e +g+ +lgW++rpL+svSaW+
  OGLUM06G21860.1 413 LLRLHYpSEGYLVQEARGACFLGWQTRPLLSVSAWQ 448
                      ***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.29938427IPR005202Transcription factor GRAS
PfamPF035141.3E-77143448IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSCQGSCNCK PRCWTCTLAL PIKPALLRCS LSSSPLAAAA ATFSGSSPSL YSGGGGGDDD  60
GYGGGDGMLR SLHSSSSSDT DNNSGGCKNN GGGGGEAAAA VEGGGDQRAV AAAAPSTRDL  120
LLACADLLQR GDLPAARRAA EIIAPFLRFA HLTANQAILE AVDGARRVHI LDLDAVHGVQ  180
WPPLLQAIAE RADPALGPPE VRVTGAGADR DTLLRTGNRL RAFARSIHLP FHFTPLLLSC  240
TTTAPHHVAG TSTGAAATAS TAAAATGLEF HPDETLAVNC VMFLHNLAGH DELAAFLKWV  300
KAMSPAVVTI AEREAGGGGG GGGDHIDDLP RRVGVAMDHY SAVFEALEAT VPPGSRERLA  360
VEQEVLGREI EAAVGPSGGR WWRGIERWGG AARAAGFAAR PLSAFAVSQA RLLLRLHYPS  420
EGYLVQEARG ACFLGWQTRP LLSVSAWQPS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-4514544888375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankFJ0326250.0FJ032625.1 Oryza nivara clone a0074E19 SEC14-like protein gene, partial cds; ABC transporter-like protein, 26S protease regulatory subunit S10B, C2 domain-containing protein, U5 small nuclear ribonucleoprotein component, charged multivesicular body protein 4b, putative SFT2 protein, fructose-bisphosphate aldolase cytoplasmic isozyme, copine-1, subtilisin-like protease precursor, ZAC, MYB-CC type transfactor, calcium ion binding protein, Monoculm1, Mlo family protein, aspartic proteinase nepenthesin-1 precursor, microtubule-associated protein MAP65-1a, IQ calmodulin-binding motif family protein, and EMB2261 putative genes, complete cds; and unknown genes.
GenBankFJ0326260.0FJ032626.1 Oryza rufipogon clone a0138I22 subtilisin-like protease precursor, ZAC, MYB-CC type transfactor, calcium ion binding protein, Mlo family protein, aspartic proteinase nepenthesin-1 precursor, microtubule-associated protein MAP65-1a, IQ calmodulin-binding motif family protein, and EMB2261 putative genes, complete cds; and unknown genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642672.10.0protein MONOCULM 1
SwissprotQ84MM90.0MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A0E0ABS60.0A0A0E0ABS6_9ORYZ; Uncharacterized protein
STRINGOGLUM06G21860.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.12e-63GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]