PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G22070.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 326aa MW: 34432.7 Da PI: 8.7023

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G22070.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.7e-09	157	204	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq OGLUM06G22070.1 157 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 204 8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	3.92E-5	93	103	No hit	No description
SuperFamily	SSF47459	2.75E-15	151	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.42E-9	151	208	No hit	No description
PROSITE profile	PS50888	14.627	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-14	153	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	157	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-8	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF101447	3.92E-5	284	303	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MRHHSPPPPP PDLSSAVGEI HPPLASAARS SSNGGGSGGS FTALLGLPTS QAMELLLPTA 60 AASAPPPPPA FPADPHLVDR AARFSAFASP SPPSPPPPPP PPPSSSSKRK PDPASKGKAA 120 AKKGKTAASG EDGGDGGEDE KPAYVHVRAR RGQATDSHSL AERARREKIN ARMELLKELV 180 PGCSKVSGTA LVLDEIINHV QSLQRQVEYL SMRLAAVNPR VDFGGLDNFL TTECGRITGL 240 NYKNGMDLEQ VTWPDMGVHG ARNLMQLQQQ FWHGDLAHPL QPPSQWEKRT DTNPPVFSNS 300 SSSLFGYDLA SSGAPAQTGN KLKTEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070970	0.0	AK070970.1 Oryza sativa Japonica Group cDNA clone:J023066J03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641463.1	1e-169	transcription factor bHLH48 isoform X2
Swissprot	Q8VZ02	5e-62	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A0E0ABV2	0.0	A0A0E0ABV2_9ORYZ; Uncharacterized protein
STRING	OGLUM06G22070.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	6e-51	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]