PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G22250.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 304aa    MW: 31910.6 Da    PI: 10.2028
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G22250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06109134227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C+ +     Ck G++C+FaHg+
  OGLUM06G22250.1 109 KTRMCNKYNTAEGCKWGSKCHFAHGE 134
                      89**********************96 PP
2zf-CCCH36.57.9e-12269294127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + G C +GdrC+FaHg+
  OGLUM06G22250.1 269 FKTKLCENFNK-GSCTFGDRCHFAHGE 294
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00356414168IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.8874569IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-45167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-14104139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-8107138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727107135IPR000571Zinc finger, CCCH-type
SMARTSM003560.97107134IPR000571Zinc finger, CCCH-type
SMARTSM003221.5E-10174244IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.105.6E-15175243IPR004088K Homology domain, type 1
PROSITE profilePS5008414.802175239IPR004088K Homology domain, type 1
PfamPF000135.9E-11177240IPR004088K Homology domain, type 1
CDDcd001052.81E-13177239No hitNo description
SuperFamilySSF547913.65E-15177269IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.5E-17266301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131268295IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7268294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-9268299IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9269294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEAGGGKRAA PEGTNGAAKR ARGVNLKVKL IKLWILDIIV LYHLPFFFFL RSTSGCPFGS  60
SCHFLHNFPG GYQAAAKMTS HGGTAVAAPP GRMPLGPGAP NGPPTSSVKT RMCNKYNTAE  120
GCKWGSKCHF AHGERELGKP MLLDNSMPHP MGSMPFEAPP MPGPDIVPPS TFGASATAKI  180
SVDASLAGGI IGKGGTNTKH ISRMTGAKLA IRDNESNPNL KNIELEGTFD QIKHASAMVT  240
ELIVRISGNA PPAKNPGRGS HAGGPGSNFK TKLCENFNKG SCTFGDRCHF AHGESELRKP  300
PAAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036090.0AP003609.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0012B02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641069.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ69XQ30.0C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0E0ABX10.0A0A0E0ABX1_9ORYZ; Uncharacterized protein
STRINGOGLUM06G22250.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-50C3H family protein