PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G23280.5
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 2071aa    MW: 227259 Da    PI: 7.508
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G23280.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-0519421963627
                       -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    6 CrffartGtCkyGdrCkFaHgp 27  
                       C+ f +tG+C+ G+rCk +H++
  OGLUM06G23280.5 1942 CPVFEATGECPQGSRCKLHHPK 1963
                       *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.918321860IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.03718321861IPR000571Zinc finger, CCCH-type
SMARTSM003561418611885IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.85918651886IPR000571Zinc finger, CCCH-type
SMARTSM003560.009418871912IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.23518871913IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-519141940IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7619141941IPR000571Zinc finger, CCCH-type
SMARTSM003561.119411963IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.43719421964IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2071 aa     Download sequence    Send to blast
MDPPPPFDHP LHRRHYSDHH HFPPGGSGGS GGAASAAARS RYEYGGGGGG GGYEPHSHHQ  60
YHLPDHHHHH HHHPPPRVQH HHHHHHQQLP APTPPPPPPP PLPQHRLEPP PPHYGFPPRG  120
HPDAYSPPPY HDPSPHHHYH RHGGDDFLPA DEIRRVGGGH HHHHHHPHLQ QLLPWEEAEE  180
ERRRYGGATQ QLRLSPSGPR KRQRCAVHDA DVESTSSSGP PPRRQRQQPH PDYALDDSFV  240
DRNNAHPGYM VHEGFSIHSD SKVSRKIQMP TQMALPGSPH GTSAGYARRA PQKVAPSRVS  300
VWHRIEENPA MYEPSSPLPH MPKEVHVSPC KSNNVAPASK ELASVISVDC RGKSADGNDG  360
DSNTGTKKNP VKKNEKVLAS VLVKPPMEPK EKEVAAKKML KKPDKVQKNA VHSNIRSLVS  420
TPCPGAGAKK VKKIVIKKIV RKINGKGNQN STPVVSEKRD GIDANACEKE EGEITTSSFE  480
KDVISAHDPI AVSDTAGFGN AVNDQKQKNT NFTNPSGRNA ASANGSMEIP DPPNGSGSAH  540
PGKEEVLSPK NPVDNSNASL VVEPIEVLEK SGTEHPRKEH DMSSIGSGVN DAFADANNHT  600
QKEVGEMNVT VAINSVRVSD AREVPRCDDS SMEESKVPKD VDANNAVCMD GVASNCDTTE  660
VCGNEDARRE CGKKLIGIND EKAFLLNNSA RSSSTSDTCM TAVEGAQKKE GIILTGSSEK  720
SIGFLGDSVG THRTTEFGAS KDAPNEGDDM PSHPSEKDFM SLNSCGGLNY TEVSEKEDIQ  780
EKEDRVPMES IVACTSSGNE DIQVNEGRKP MELSEANAFS GSGDSQGKEC RIPMGSSETN  840
TSSVNHVNAS NEKDFSLSED TQKKESHRPI ESCENTTFEI MHHEEAPSTE EVITGVSLGR  900
KVAEGPTRSN ERCSGARGNS ATTLKFGLAC ATKDNQMEDL LNNRTALNET DDPLDAEDSP  960
VFVPPSSRNV ESTYASPLYD PMEDSTSDGI LNIGLGRNTT SKAAELLDLH RDHISSENDS  1020
LIHSRGTSSV SGNREQSVPT ALTLGSNIYF SSAETDDRPE ERHELVVEGQ QGLTVETTSK  1080
LDSPGKIEVL NGAGFISTGI QNWLSLPPSI NSMEMSGQFL NNGFTVSKGR LGLDQSMDDA  1140
TSMSQDHDIA QDMDQRGSED AFFSQDHSIR LCGSDLPHSH LLAPKESSMN GEDQSGIVLT  1200
GLHPSSSVNV LGHYGYQTDD IPVDNLNKLP SALESSDAMD ADQVSSQVCV NPDHTNDSNT  1260
ENAGVESNAK QDLLSSWIEA IVSEAKKEHP PCKSTPLTVG LPDKLLEPKD SDRKTLLETV  1320
VPSAVKSPQI NFASSTLQKV APKQVTLPSS SREPTRANQN ARHRTWHRGN IASSSSSLHA  1380
SQPLGLPPKL PPKKNDKAQN SYIRKGNALI RNPSNGNHPH SSTGHDTQNK LNKPVVRRSM  1440
NFVRTADTKD LANSNISVER PKTPPLPLHT KSSCPTTLLE PLSQTLQKQH GHEAEKEDLT  1500
GQPKSGVDNS SIKSAQKSEP SDPSKVVYVR PKSNQLVAAQ RQHPIDLVNS PTDKILSLQA  1560
PIASDLYLKK RKNQIVLSSC SPSDGLSTKE TLPAENSNSE EKKDLMIACS ISGIPGVKDR  1620
PQKALQTTNN VGRFSHVWTL NGQQPQRKGF MGSSHMNAFP RILPWKRKIF CKNFRSSHMS  1680
NVSSIRIVRK LLQTRKRDMI YTVSTDGFSL RKSGVLSVGG SSLKWSRSLE KRSQKVNKEA  1740
TLALAEVERR KREKRKRQSL HDKGDHQFES VTGNQLRNSR QSSSDLRKPS TCNEYVRVSK  1800
GNQLVRNPKN VIRMLASDKV RWSLHTVRSR LAKKQQYCQF FTRFGECKKP RGKCPYIHDR  1860
AKVTICTKFL KGLCSNTSCK LTHKVLPERM PDCSYFLRGL CTNIACPYRH VKVNLNAPVC  1920
EDFLKGYCAY GDECHKKHSY VCPVFEATGE CPQGSRCKLH HPKSKVKSKS RRPDFLQNSS  1980
WGRYFDASID HQDETRKVSL DEDEREKPQR VFSDGDLGFI SLDDDADEDV TALDASDDIP  2040
LMELDSGDLS AQTDNLDALI KPLRIMRTAR V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fbs_C2e-151838196341168Cleavage and polyadenylation specificity factor subunit 4
6fuw_C2e-151838196341168Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
117481753RRKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035730.0AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643043.10.0uncharacterized protein LOC4341610 isoform X2
TrEMBLA0A0E0AC990.0A0A0E0AC99_9ORYZ; Uncharacterized protein
STRINGOGLUM06G23280.50.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67031010