PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G24950.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 278aa MW: 30003.5 Da PI: 6.5348

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G24950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	56.1	8.2e-18	134	186	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 e kr rr+ +NRe+ArrsR+RK+a++ eLe v++L++eN++L k+l e +++ OGLUM06G24950.1 134 ETKRIRRMVSNRESARRSRRRKQAQLSELESQVEQLKGENSSLFKQLTESSQQ 186 68******************************************888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-15	132	196	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.553	134	197	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-15	134	186	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.25E-13	136	188	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.5E-14	136	188	No hit	No description
PROSITE pattern	PS00036	0	139	154	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MMKKCPSELQ LEAFIREEAG AGDRKPGVLS PGDGARKSGV FSPGDGEMSV LDQSTLDGSG 60 GGHQLWWPES VRTPPRAAAA FSATADERTP ASISDDPKPT TSANHAPESD SDSDCDSLLE 120 AERSPRLRGT KSTETKRIRR MVSNRESARR SRRRKQAQLS ELESQVEQLK GENSSLFKQL 180 TESSQQFNTA VKMAEDMVAR AAMSCGLGQL GLAPLLSSRK MCQALDMLSL PRNDACGFKG 240 LNLSRQVQNS PVQSAASLES LDNRISSEVT SCSADVWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	155	RRSRRRKQ
2	150	155	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT832853	0.0	CT832853.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113E18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643805.1	1e-172	bZIP transcription factor RISBZ5
Swissprot	Q654B3	1e-173	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	A0A0E0ACU9	0.0	A0A0E0ACU9_9ORYZ; Uncharacterized protein
STRING	OGLUM06G24950.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	1e-17	basic leucine zipper 9

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]