PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G25500.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 333aa    MW: 35266.9 Da    PI: 7.5813
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G25500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.7e-1376120147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  OGLUM06G25500.1  76 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 120
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.36E-1670126IPR009057Homeodomain-like
PROSITE profilePS5129414.62871125IPR017930Myb domain
TIGRFAMsTIGR015571.2E-1874123IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.0E-675116IPR009057Homeodomain-like
SMARTSM007172.7E-1075123IPR001005SANT/Myb domain
PfamPF002491.3E-1076120IPR001005SANT/Myb domain
CDDcd001678.35E-878121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSATPNPIDA SVVSAAAAVA GGGGGGDGGG GGGGKEKEKQ VVAAPLQPPM AVPAPAAAVG  60
EEARKVRKPY TITKSRESWT EPEHDKFLEA LQLFDRDWKK IEAYVGSKTV IQIRSHAQKY  120
FLKVQKNGTG EHLPPPRPKR KAAHPYPQKA SKNVSPAAIS QPPPLGEQGC VMSMDTSPVI  180
RNTNASAVVP SWDNSIAQPL SASRTQGTGA VATNNCSSSI ESPSTTWPTS EAVEQENMLR  240
PLRAMPDFAQ VYSFLGSIFD PDTSGHLQTL KAMDPIDVET VLLLMRNLSM NLTSPNFAAH  300
LSLLSSCNSG GDPIKSEGME NLGSPQSCHL PFM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708710.0AK070871.1 Oryza sativa Japonica Group cDNA clone:J023073K02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643725.10.0protein REVEILLE 6 isoform X3
SwissprotQ8H0W31e-95RVE6_ARATH; Protein REVEILLE 6
TrEMBLB8B1680.0B8B168_ORYSI; Uncharacterized protein
STRINGONIVA06G30670.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.24e-83MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]