PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G01560.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 186aa MW: 19491.8 Da PI: 11.2135

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G01560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.2	7.5e-13	67	118	1	52
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 e++++r rrk++NRe+ArrsR+R+++++eeLe+ ++eL ae++aL+++l+ OGLUM07G01560.1 67 EERRRRLRRKISNRESARRSRARRRQRVEELERAADELRAERRALASRLDAT 118 68899*******************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.5E-8	66	117	No hit	No description
SMART	SM00338	2.1E-7	67	131	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.3E-9	67	117	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.036	69	132	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.84E-8	71	122	No hit	No description
PROSITE pattern	PS00036	0	74	89	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MPLDFGLPDM DVGFGLFGVD AAAFGYDGVA SDAAAGLSPV VGAGDGSGGG GDVLLYCDGG 60 GGEDGEEERR RRLRRKISNR ESARRSRARR RQRVEELERA ADELRAERRA LASRLDATAR 120 RALAVRGANA RLHAEAGVLR RRLGEAQRNA TVLIGLSRLL RSTANGAHGG AAPAQLSNGG 180 VASLMT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003702	0.0	AP003702.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1007_H09.
GenBank	AP005309	0.0	AP005309.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0474G09.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CU406121	0.0	CU406121.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108M06, full insert sequence.
GenBank	CU406481	0.0	CU406481.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103G11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0AFE9	1e-121	A0A0E0AFE9_9ORYZ; Uncharacterized protein
STRING	OGLUM07G01560.1	1e-122	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16831	9	9