PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G02780.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 228aa    MW: 23897.6 Da    PI: 8.2212
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G02780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00147294123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  C ++F+ +  L  H++ H
  OGLUM07G02780.1 72 FPCLFCERTFRKSQALGGHQNAH 94
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-61236No hitNo description
SMARTSM0035561436IPR015880Zinc finger, C2H2-like
PfamPF139120.00741438IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1591441IPR007087Zinc finger, C2H2
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-66794No hitNo description
SMARTSM003553.87294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3677299IPR007087Zinc finger, C2H2
PfamPF139120.00117296IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MESSRRHGGG ARLFPCLFCD RTFLKSQALG GHQNAHRKDR VACGGSCNPY LYGGGGHDPY  60
YAWGGGGGAR LFPCLFCERT FRKSQALGGH QNAHRKDRVA AGRNPYVYYA AGAPSFSSAA  120
GSEVVTAGLA AAAWSIPISS HGCSDVGPIE RRSGVGVGIG AGGRRLTEHA QLMAAVGGAG  180
RDENTVDMLN WTRASHAAAA ADDDDSSMGA GDEQMDLELR LSRSSCLY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5567183e-42EU556718.1 Oryza rufipogon isolate C-4 prostrate growth 1 (PROG1) mRNA, complete cds.
GenBankEU5567193e-42EU556719.2 Oryza rufipogon isolate C-4 prostrate growth 1 (PROG1) gene, complete cds.
GenBankEU5567203e-42EU556720.1 Oryza rufipogon isolate YD2-0772 prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497563e-42HM149756.1 Oryza rufipogon bio-material YD2-0778 prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497573e-42HM149757.1 Oryza rufipogon bio-material S3053 prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497583e-42HM149758.1 Oryza rufipogon bio-material YD2-0344 prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497593e-42HM149759.1 Oryza rufipogon bio-material YD2-0356 prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497603e-42HM149760.1 Oryza rufipogon bio-material YD2-0368 prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497613e-42HM149761.1 Oryza rufipogon bio-material YD2-0775 prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497623e-42HM149762.1 Oryza rufipogon bio-material S2218 prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497633e-42HM149763.1 Oryza rufipogon bio-material C21 prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497643e-42HM149764.1 Oryza rufipogon bio-material B2 prostrate growth 1 (PROG1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0AFV01e-165A0A0E0AFV0_9ORYZ; Uncharacterized protein
STRINGOGLUM07G02780.11e-165(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP384714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-11C2H2 family protein