PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G05050.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 334aa    MW: 36763.7 Da    PI: 8.6797
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G05050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.5e-19109208199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+l+ sdv++   l+lp + a++       +++ + +  l ++d++g +W++++  + ++gr++lt+GW eFv a++L  gD+vvF+  +r 
  OGLUM07G05050.1 109 FEKQLSLSDVFA---LTLPESGANDVlpplqrNLNAADQPLLFIKDLRGVRWKFRHVLSDHDGRHLLTTGWGEFVVAKRLVYGDSVVFM--RRP 197
                      889999999997...57999999888999999777777779************************************************..679 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+++v+r+
  OGLUM07G05050.1 198 DGELLLGVRRR 208
                      *********97 PP
2Auxin_resp37.88.4e-14235295968
       Auxin_resp   9 svFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsd 68 
                       +F+v+Y+Pr+st eFvv++e v ++    +++G  +++ ++ +d ++r+    Gtv++   
  OGLUM07G05050.1 235 LPFDVTYYPRVSTDEFVVRREVVDASP-AAFAPGVPVRLLMNPDDTRRRTEmvFGTVRADDS 295
                      69*****************99888777.99****************9998655777765444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-23104208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.11E-19104208IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.956106209IPR003340B3 DNA binding domain
CDDcd100173.99E-14108207No hitNo description
PfamPF023621.4E-15109208IPR003340B3 DNA binding domain
SMARTSM010193.1E-10109209IPR003340B3 DNA binding domain
PfamPF065072.5E-7235291IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEVQPPVVDC DVWFACAAPY SGRLPAVGSR VYYFPHGHAE QCGVPLTPQF PYRHCFPCTV  60
TQLVVSVDGA DEIHATISLQ PGDRDDVPHR RAVPAGCSPG PDQREFCFFE KQLSLSDVFA  120
LTLPESGAND VLPPLQRNLN AADQPLLFIK DLRGVRWKFR HVLSDHDGRH LLTTGWGEFV  180
VAKRLVYGDS VVFMRRPDGE LLLGVRRRGP DGSHPGPESS HATTAARLAS RRWSLPFDVT  240
YYPRVSTDEF VVRREVVDAS PAAFAPGVPV RLLMNPDDTR RRTEMVFGTV RADDSLRAWR  300
KLELAKRARG SGGGRSTATA GAGGLAIAST RPSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-32630449368Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579544.17e-64auxin response factor 13
RefseqXP_010240662.17e-64auxin response factor 13
SwissprotA3BH854e-58ARFT_ORYSJ; Putative auxin response factor 20
TrEMBLA0A0E0AGM50.0A0A0E0AGM5_9ORYZ; Auxin response factor
STRINGOGLUM07G05050.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169621012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.15e-38auxin response factor 17