PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G07210.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 308aa    MW: 33138.4 Da    PI: 4.8067
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G07210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN346.78e-1543146139232
                      S-HHHHHHHHHHHSSSSSS-..TTS--TTT--...HHHH---S--HHHHHHT--TT--......-----GGG--HHHHHHHHHHHHHHTGGGHH CS
             EIN3 139 lqDTtlgSLLsalmqhcdpp..qrrfplekgv...epPWWPtGkelwwgelglskdqg.....tppykkphdlkkawkvsvLtavikhmsptie 222
                      l + tl  +L    q c+pp   rr     ++   +pPWWPt +e wwg+  +++  g     + p+  p+ l ka kv+vL av++h++p++ 
  OGLUM07G07210.1  43 LRNGTLERMLREMAQECTPPlvARRDRKSGATpppPPPWWPTAEEPWWGTEVAAHLRGrrmatPVPFASPRRLAKAEKVAVLVAVVRHVAPDFG 136
                      66667777888888999999664555555555222568***********6654444447899888****************************9 PP

                      HHHHTTTTSS CS
             EIN3 223 eirelerqsk 232
                      ++   + +s+
  OGLUM07G07210.1 137 RLAAAAGRSR 146
                      9887776664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.3180.108.4E-3634172IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167684.32E-4137167IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
PfamPF048731.7E-1538147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVGVAPLMLS PVTMQAQLLC YVAMPMAPVA GGGVPLAAAL CRLRNGTLER MLREMAQECT  60
PPLVARRDRK SGATPPPPPP WWPTAEEPWW GTEVAAHLRG RRMATPVPFA SPRRLAKAEK  120
VAVLVAVVRH VAPDFGRLAA AAGRSRLTEL ESSIWESALR GERERRYVVM PSFILLPPPP  180
PPPPQHAHSA ESAAAHAGPE PESADQTAVD FSVSGEDTVT TGPELEQLVG DGNGATVEGE  240
GQKTEDSPVP PLLEQHGGED HDHHRQHGGF SGEVSGAAPE DVDWFDYDEV LRGLDELEIP  300
SFFGGYYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A4e-133916211128ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037400.0AP003740.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1118_B03.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645905.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A0E0Q5Q00.0A0A0E0Q5Q0_ORYRU; Uncharacterized protein
TrEMBLQ8LIR80.0Q8LIR8_ORYSJ; Os07g0223600 protein
STRINGORUFI07G07520.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1804988