PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G07370.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 358aa MW: 36014.4 Da PI: 10.1127

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G07370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.1	3.9e-38	73	131	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +e lkcprCdstntkfCy+nnysl+qPr+fCkaCrryWt+GGalrnvPvGgg r+nk+ OGLUM07G07370.1 73 PEPGLKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPVGGGFRRNKR 131 56789****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-36	63	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-32	77	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.348	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MWNQHQAHHG HHQLHQSVEA NQLPMTSASL LLAPRPPDMA AAGILPVSGG GGASSARPAS 60 MAERARMAKI PQPEPGLKCP RCDSTNTKFC YFNNYSLTQP RHFCKACRRY WTRGGALRNV 120 PVGGGFRRNK RGTKPSNSKK PAAAVAGGVM APPHAQLQLP FGFDGGGGGG HGSIIGGGGG 180 GGASRLGFPE LSSLHAAAAV DYQLGGGGGG DGLGLERQRL LHFPFLARSN AAVHPPPLMS 240 TAAGISYPFG DVAAGGLGGD MPANAASVAG SAGLITQMAS VKMDDIDNHP PPSAATTTAS 300 SPIEFLGLRG SLQFWGGGGG HRGGGDGAGG SAAPGGGGGG GRWSDLPAFD LSTSGNIL

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MWNQHQAHHG HHQLHQSVEA NQLPMTSASL LLAPRPPDMA AAGILPVSGG GGASSARPAS  60
MAERARMAKI PQPEPGLKCP RCDSTNTKFC YFNNYSLTQP RHFCKACRRY WTRGGALRNV  120
PVGGGFRRNK RGTKPSNSKK PAAAVAGGVM APPHAQLQLP FGFDGGGGGG HGSIIGGGGG  180
GGASRLGFPE LSSLHAAAAV DYQLGGGGGG DGLGLERQRL LHFPFLARSN AAVHPPPLMS  240
TAAGISYPFG DVAAGGLGGD MPANAASVAG SAGLITQMAS VKMDDIDNHP PPSAATTTAS  300
SPIEFLGLRG SLQFWGGGGG HRGGGDGAGG SAAPGGGGGG GRWSDLPAFD LSTSGNIL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068542	0.0	AK068542.1 Oryza sativa Japonica Group cDNA clone:J013155H18, full insert sequence.
GenBank	AP004303	0.0	AP004303.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0407H12.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645541.1	0.0	dof zinc finger protein DOF5.1 isoform X3
TrEMBL	A0A0E0AHF8	0.0	A0A0E0AHF8_9ORYZ; Uncharacterized protein
STRING	OGLUM07G07370.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	1e-41	OBF-binding protein 3