PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G08890.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 462aa    MW: 49904.8 Da    PI: 8.3619
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G08890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3452.6e-1491227129265
                      .XX----STTS-HHHHHHHHHHHSSSSSS-TTS--T..TT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGG CS
             EIN3 129 rsseshslselqDTtlgSLLsalmqhcdppqrrfpl..ekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmspt 220
                      rss    +s l D  l  + + lm+ c ppq  +pl  +  + pPWWPtG+e+ww+elg+ +    ppy+    l ka k     a +k + p+
  OGLUM07G08890.1  91 RSSLAMAVSGLADHVLERMVKVLMRKCHPPQALYPLigKSPLRPPWWPTGREQWWPELGAGA--VVPPYRPAPLLSKAEKEVAVVAMVKNLVPD 182
                      5566667777888888888999*************95456799*************999764..4689**98899999986666788999**** PP

                      HHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX CS
             EIN3 221 ieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss 265
                      +e++   +r   ++ ++++  e  a+   +  e++ +   ++h  
  OGLUM07G08890.1 183 FERLFMAVRMAPSVTSRITDAEARAWDDGVAGERETYMARHPHRT 227
                      **************************9999999888888888743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.3180.101.2E-3890225IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
PfamPF048733.7E-1795210No hitNo description
SuperFamilySSF1167682.22E-4495220IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MDASKKSVMT KEEQQLSPAA SPAAAVMTAE ADAINEEQDK AAAATTADHT APPPPPPPAA  60
AAVADHAGEM DMASGSGVAH LAPPAVAPAP RSSLAMAVSG LADHVLERMV KVLMRKCHPP  120
QALYPLIGKS PLRPPWWPTG REQWWPELGA GAVVPPYRPA PLLSKAEKEV AVVAMVKNLV  180
PDFERLFMAV RMAPSVTSRI TDAEARAWDD GVAGERETYM ARHPHRTTPT RAWKLMDSLK  240
PEAVRMKLKA PKPKPQVTIK VEDAAPFLTV SAAADPAAVE AAMGAIDAMR NSSKDPDAPY  300
YPMPSPLHGH NEVGPNDYPE NPAIWKEFNR KEGQLDLLRV GKKNDRMAIS DRVDGGASGS  360
GPRKGYLVMK TYKKAQEYYR ELRNKGAMAS GAGVKIEDDS ETESDNEDEK AKAKAKARAV  420
YQQNKGVKTE DQSETESDNE DEQAKVMAKA KARVIPRPNK GI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A2e-159620810121ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646400.20.0uncharacterized protein LOC107276281
TrEMBLA0A0E0AHZ90.0A0A0E0AHZ9_9ORYZ; Uncharacterized protein
STRINGOGLUM07G08890.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159701112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.12e-14ETHYLENE-INSENSITIVE3-like 3