PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G10870.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 219aa    MW: 22718.1 Da    PI: 8.9855
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G10870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-1773123255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      g+ GVr ++ +gr++AeIrd + ng   r++lg+f++ae Aa a+++a+++ +g
  OGLUM07G10870.1  73 GFIGVRKRP-WGRFAAEIRDSTRNG--VRVWLGTFDSAEAAAMAYDQAALSARG 123
                      789******.**********44465..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.57573131IPR001471AP2/ERF domain
PfamPF008477.9E-1273123IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2073133IPR016177DNA-binding domain
SMARTSM003805.3E-2973137IPR001471AP2/ERF domain
PRINTSPR003674.1E-87485IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-2774132IPR001471AP2/ERF domain
PRINTSPR003674.1E-897113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEQHSHCWYY GGGMAVTAAA GAGAASSTSS ESQPSGYDYE TAGSAEVSAP GGGAGRERAA  60
RKEEGGAGAA AAGFIGVRKR PWGRFAAEIR DSTRNGVRVW LGTFDSAEAA AMAYDQAALS  120
ARGAAAALNF PVERVRESLR ALALGAAGGS PVLALKGRHS KRKRRKRSEL AGATATANKT  180
TTTTSATTGG EHKQIVLELE DLGADYLEEL LWMSEQTSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2466133774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165KRKRRK
2160166KRKRRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645812.11e-86ethylene-responsive transcription factor 15
SwissprotA0A3Q7I5Y93e-42ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A0E0AIP51e-153A0A0E0AIP5_9ORYZ; Uncharacterized protein
STRINGOGLUM07G10870.11e-154(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-19ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]