PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G11160.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 103aa    MW: 10776.7 Da    PI: 7.7425
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G11160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-051739123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H++ H
  OGLUM07G11160.1 17 YECTFCKRGFTNAQALGGHMNIH 39
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.88E-71543No hitNo description
PfamPF139129.6E-61641IPR007087Zinc finger, C2H2
SMARTSM003550.00971739IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.3E-51743IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4891744IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MDGEGAPARR APAASYYECT FCKRGFTNAQ ALGGHMNIHR KDRSAGGKSQ GGGQHHEGGG  60
SGSGGGGGQQ HGREVHLGLT LGRNEEERDG VDLELRLGHA HYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14552GGKSQGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043361e-172AP004336.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0498D08, complete sequence.
GenBankAP0051681e-172AP005168.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0066B06.
GenBankAP0149631e-172AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-172CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646403.11e-67zinc finger protein STAMENLESS 1-like
TrEMBLA0A0E0AIT29e-67A0A0E0AIT2_9ORYZ; Uncharacterized protein
STRINGOGLUM07G11160.12e-67(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-15C2H2 family protein