PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G11600.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 231aa    MW: 26358.2 Da    PI: 5.6468
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G11600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.24.5e-2156107556
                      SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       ++t++q++ Le++Fe++ y+  ++r eLAkklg++erqVk+WFqNrR+++k
  OGLUM07G11600.1  56 KRHTDDQIKHLESVFERCTYLGGNQRVELAKKLGMEERQVKFWFQNRRTRKK 107
                      579***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-2144108IPR009057Homeodomain-like
PROSITE profilePS5007116.82749109IPR001356Homeobox domain
SMARTSM003891.2E-1751113IPR001356Homeobox domain
SuperFamilySSF466898.36E-1951107IPR009057Homeodomain-like
CDDcd000861.06E-1853107No hitNo description
PfamPF000462.0E-1856107IPR001356Homeobox domain
PRINTSPR000311.8E-68089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000311.8E-689105IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDNGSQQESS DLHVHHLPIA SVIGVEDHTE EADDAAVDYH DDGSEGQDEV SNKRMKRHTD  60
DQIKHLESVF ERCTYLGGNQ RVELAKKLGM EERQVKFWFQ NRRTRKKMHD ERQEGMWLQE  120
ENDVLHAENK VLKEAIWANI CFTCGSPVVP AIPTVHHRYL SFQNMRLADE LQHATAVFNM  180
VAQDADVGLP PVFPLTDVSP LPQFGFVTGN NQTSLEQHHG KDQQHASNGK W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042981e-168AP004298.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0409D09.
GenBankAP0056901e-168AP005690.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0052I14.
GenBankAP0149631e-168AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-168CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0AIZ61e-174A0A0E0AIZ6_9ORYZ; Uncharacterized protein
STRINGOGLUM07G11600.11e-175(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149301619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.13e-31homeodomain GLABROUS 1