PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G11720.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 202aa    MW: 23159.6 Da    PI: 10.2702
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G11720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-162973348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd +l ++ k+ G ++W+++ar m+ +R++ +c++rw+ +l
  OGLUM07G11720.1 29 AWTPEEDARLQRLAKENGFRRWSRVARSMP-RRSARSCRDRWRHHL 73
                     7*****************************.***********9886 PP
2Myb_DNA-binding24.46.9e-0881124348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++T+ +d+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  OGLUM07G11720.1  81 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 124
                      79****************99.********9.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0842277IPR017930Myb domain
SMARTSM007175.5E-132675IPR001005SANT/Myb domain
SuperFamilySSF466891.45E-2327120IPR009057Homeodomain-like
CDDcd001671.28E-132973No hitNo description
Gene3DG3DSA:1.10.10.602.0E-192985IPR009057Homeodomain-like
PfamPF002491.2E-142973IPR001005SANT/Myb domain
PROSITE profilePS500907.36474124IPR017877Myb-like domain
SMARTSM007172.4E-478126IPR001005SANT/Myb domain
PfamPF002495.9E-681123IPR001005SANT/Myb domain
CDDcd001672.61E-481123No hitNo description
Gene3DG3DSA:1.10.10.601.3E-886124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDQEVIMATP PLPPPPRARC VVRLKLPPAW TPEEDARLQR LAKENGFRRW SRVARSMPRR  60
SARSCRDRWR HHLARDVYHR PFTARDDDEL LRLHYRLGDR WKEIGRAVYG RTSRVMKHRW  120
RELRRSGFPL AAAARKEQAL AMVDNMVESE VDESDQSLPP PELQRSLADA LASSFGCCSL  180
AHDHAMDPLA GSLALGFACM AV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-1730120797MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-173012561156MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-173012561156MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-1730120797C-Myb DNA-Binding Domain
1msf_C2e-1730120797C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052000.0AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.11e-126transcription factor MYB73
TrEMBLA0A0E0AJ081e-143A0A0E0AJ08_9ORYZ; Uncharacterized protein
STRINGOGLUM07G11720.11e-144(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.18e-19myb domain protein 70