PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G12990.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 128aa    MW: 13411.6 Da    PI: 8.1449
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G12990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.55e-143660125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr+lL+YP+GA+s++Ca+C tV
  OGLUM07G12990.1 36 CSGCRNLLMYPAGATSICCAVCGTV 60
                     ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.4E-133363IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-113660IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MPSVQAAGTA MLVPLAPYPT PVPFTPPNGA QSQLVCSGCR NLLMYPAGAT SICCAVCGTV  60
TAVPAPEQKS SCNVHENKER LKGNTNGFRA PQRCARRVDG ACTQVAREVH TEVALVIFTL  120
LCVTLPDG
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0996231e-168AK099623.1 Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882891.11e-84protein LOL1 isoform X1
SwissprotQ69UP73e-68LOL1_ORYSJ; Protein LOL1
TrEMBLA0A0E0AJI37e-88A0A0E0AJI3_9ORYZ; Uncharacterized protein
STRINGOGLUM07G12990.52e-67(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.12e-16lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]