PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G12990.3

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 208aa MW: 22359.9 Da PI: 8.2038

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G12990.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.5	1e-13	119	143	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+s++Ca+C tV OGLUM07G12990.3 119 CSGCRNLLMYPAGATSICCAVCGTV 143 ************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	3.0E-13	116	146	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.2E-11	119	143	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MAVLYVTFLR EVDVGRGLVA LCAHWLKLIV ALLSTSLIYQ EVLSSLAFTG FFRTEIFLAF 60 SSASLESFCR ERKGDFSCLT VAGICEASTS DAIGSGSWHS NAGSPCPISN SWAQSQLVCS 120 GCRNLLMYPA GATSICCAVC GTVTAVPAPE QKSSCNVHEN KERLKGNTNG FRAPQRCARR 180 VDGACTQVPN PLTLAMSLEK YTLKLLCK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK061509	1e-125	AK061509.1 Oryza sativa Japonica Group cDNA clone:006-309-F08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644598.1	1e-50	protein LOL1 isoform X2
Swissprot	Q69UP7	1e-51	LOL1_ORYSJ; Protein LOL1
TrEMBL	A0A0E0AJI5	1e-151	A0A0E0AJI5_9ORYZ; Uncharacterized protein
STRING	ORUFI07G14090.1	1e-101	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	5e-16	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]