PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G13540.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 513aa    MW: 58584.6 Da    PI: 10.1079
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G13540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-15376423148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ l+ +++++G g+W++++   g  R+ k+c++rw +yl
  OGLUM07G13540.1 376 KGPWTPEEDLMLASYIQEHGAGNWRAVPTNTGVMRCSKSCRLRWTNYL 423
                      79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF071602.2E-6889318IPR009829Spindle and kinetochore-associated protein 1
PROSITE profilePS5129420.514374427IPR017930Myb domain
SMARTSM007179.8E-13375425IPR001005SANT/Myb domain
PfamPF002492.1E-15376423IPR001005SANT/Myb domain
SuperFamilySSF466892.74E-21377450IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-23377427IPR009057Homeodomain-like
CDDcd001676.98E-10378423No hitNo description
SuperFamilySSF530679.71E-11422505No hitNo description
PROSITE profilePS500904.286424471IPR017877Myb-like domain
SMARTSM0071745428480IPR001005SANT/Myb domain
Gene3DG3DSA:3.30.420.403.8E-13428504No hitNo description
PfamPF000221.0E-10433504IPR004000Actin family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007059Biological Processchromosome segregation
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0008017Molecular Functionmicrotubule binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MSRLILRCYI MGRREYLLLE QLIKQANHRN RSLKFKYPTL HFASPPKFPI PPRRRRRRAI  60
PGPPLPMDAG DASRLGESLD AVSAAFQSRV MELQELVLAR NMYPATAIPD LAAVDVSLTA  120
MEAQLQAVRR RLQEEREAFP KAKKLVQQSL KQQRRLQLML ANMPTGMRED VFATPLEHNS  180
SMMFPESLNF SSAVPEVRDH DLKIKEEPTA PPKKKGRGPA PRWYISTEEL DSLSSYMRGR  240
LTLEKVNIAI NEVASYADGN AHLVACPKKK LSEDTWEKAL ELRDIAARES VKGKHFFLET  300
DIKGPGLKLD TTGKAILTGR HRYPPGYLRC RHQHASLLLP DRDRVDTHTP PTTGRPPRTG  360
EQDGEAAVLR QGWVKKGPWT PEEDLMLASY IQEHGAGNWR AVPTNTGVMR CSKSCRLRWT  420
NYLRPGIKRG NFTEQEEKLI VHLQALLGNR RDHMEVISLM KDGTFIDWDI VDNIWNHAFS  480
FYPEEHPMLI VEPSTNTGQQ REKYLLTLKI MKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257RRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0647410.0AK064741.1 Oryza sativa Japonica Group cDNA clone:002-120-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0AJQ90.0A0A0E0AJQ9_9ORYZ; Uncharacterized protein
STRINGOGLUM07G13540.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.18e-46myb domain protein 30