PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G13800.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 930aa    MW: 104276 Da    PI: 7.4941
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G13800.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1166.73.7e-52311463117
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                       e  +rw +++ei+aiL+n++++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdg+tv+E+hekLK+g+ e +++yYa++e++p+f 
  OGLUM07G13800.2  31 AEaAARWFRPNEIYAILANHARFKIHAQPVDKPVSGTVVLYDRKVVRNFRKDGHNWKKKKDGRTVQEAHEKLKIGNEERVHVYYARGEDDPNFF 124
                      45589***************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylev 117
                      rrcywlL+++le+ivlvhy+++
  OGLUM07G13800.2 125 RRCYWLLDKDLERIVLVHYRQT 146
                      *******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.85826152IPR005559CG-1 DNA-binding domain
SMARTSM010762.9E-6329147IPR005559CG-1 DNA-binding domain
PfamPF038594.1E-4533145IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.2E-10384470IPR014756Immunoglobulin E-set
SuperFamilySSF484033.11E-17559683IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-17569683IPR020683Ankyrin repeat-containing domain
CDDcd002045.39E-15569677No hitNo description
PROSITE profilePS5029717.953585689IPR020683Ankyrin repeat-containing domain
PfamPF127969.2E-8591681IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.835618650IPR002110Ankyrin repeat
SMARTSM002489.6E-6618647IPR002110Ankyrin repeat
SMARTSM00248580657686IPR002110Ankyrin repeat
SuperFamilySSF525408.5E-9734835IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.54769795IPR000048IQ motif, EF-hand binding site
SMARTSM000151.5784806IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.785785812IPR000048IQ motif, EF-hand binding site
PfamPF006120.002787805IPR000048IQ motif, EF-hand binding site
SMARTSM000150.016807829IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.274808832IPR000048IQ motif, EF-hand binding site
PfamPF006120.0092810829IPR000048IQ motif, EF-hand binding site
SMARTSM000152.4890912IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.084892920IPR000048IQ motif, EF-hand binding site
PfamPF006120.044893912IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MAGAGGWDPL VGSEIHGFLT YPDLNYEKLV AEAAARWFRP NEIYAILANH ARFKIHAQPV  60
DKPVSGTVVL YDRKVVRNFR KDGHNWKKKK DGRTVQEAHE KLKIGNEERV HVYYARGEDD  120
PNFFRRCYWL LDKDLERIVL VHYRQTAEEN AMAPPNPEPE VADVPTVNLI HYTSPLTSAD  180
STSGHTELSL PEEINSHGGI SASSETGNHD SSLEEFWANL LESSIKNDPK VVTSACGGIF  240
DKAMTIDITV VDQQINNGPK NSGNIFNTSM ASNAIPALNV VSETYATNHG LNQVNANHFG  300
ALKHQGDQTQ SLLASDVDSQ SDQFISSSVK SPMDGNTSIP NEVPARQNSL GLWKYLDDDS  360
PGLGDNPSSV PQSFCPVTNE RLLEINEISP EWAYSTETTK VVVIGNFYEQ YKHLAGSAMF  420
GVFGDQCVAG DIVQTGVYRF MVGPHTPGKV DFYLTLDGKT PISEICSFTY HVMHGSSLEA  480
RLPPSEDDYK RTNLQMQMRL ARLLFATNKK KIAPKLLVEG TKVANLMSAL SEKEWMDLWN  540
ILSDPEGTYV PVTESLLELV LRNRLQEWLV EMVMEGHKST GRDDLGQGAI HLCSFLGYTW  600
AIRLFSLSGF SLDFRDSSGW TALHWAAYHG RERMVATLLS AGANPSLVTD PTPESPAGLT  660
AADLAARQGY DGLAAYLAEK GLTAHFEAMS LSKDTEQSPS KTRLTKLQSE KFEHLSEQEL  720
CLKESLAAYR NAADAASNIQ AALRERTLKL QTKAIQLANP EIEASEIVAA MKIQHAFRNY  780
NRKKAMRAAA RIQSHFRTWK MRRNFINMRR QVIRIQAAYR GHQVRRQYRK VIWSVGIVEK  840
AILRWRKKRK GLRGIASGMP VVMTVDAEAE PASTAEEDFF QAGRQQAEDR FNRSVVRVQA  900
LFRSYKAQQE YRRMKIAHEE AKHDHLFIRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0654800.0AK065480.1 Oryza sativa Japonica Group cDNA clone:J013025F20, full insert sequence.
GenBankAK0709760.0AK070976.1 Oryza sativa Japonica Group cDNA clone:J023073E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646432.10.0calmodulin-binding transcription activator CBT-like isoform X2
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A0E0AJU20.0A0A0E0AJU2_9ORYZ; Uncharacterized protein
STRINGOGLUM07G13800.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators