PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G14320.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 1198aa MW: 128260 Da PI: 6.6847

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G14320.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.5e-06	1139	1163	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k +lC ++++ G+C+ G+ C+ aHg OGLUM07G14320.1 1139 KARLCERWMQDGECPNGNGCHDAHG 1163 669*****************98887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54928	3.4E-6	410	464	IPR012677	Nucleotide-binding alpha-beta plait domain
Gene3D	G3DSA:3.30.70.330	9.2E-4	422	464	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS50103	9.441	945	975	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	10	945	974	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.366	1137	1165	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.71E-5	1137	1166	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.02	1137	1164	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-6	1138	1166	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1198 aa Download sequence Send to blast
MAGDDADRNR PGRGRESLPG GATSSSSPPC SNFDGLNAQA ATSIPAAFGS GPTTTTTGGG 60 DSPGDSSRIA SHLVELEDTR RSADFVPSRH DAIYVPSGRP NPLRPIGHRE DYYSGSGSAT 120 AFFPISRDPV HVPISRDIAL PPIGHPSQGR LKSGSSSASA GDDMINSSAA VSHSTGAGGG 180 FSSRHAPASD EAKKQQRAMA IRRQQQQQQQ LQLAMEIWRQ QQQQLAAAMW QEQQQQEDEM 240 AIRKQQKQDR SMVFWQQLRA MTPSSASSSS SSSSAAVADN LAPSAAAAAE GSPSPTTPTT 300 GADQKNVGGD NDADYRRLPE HMSTTNDEAT TSSTSSSPPS ELLDALDTVA KAVGDAVRFA 360 FKMDPKTTFL AHGLADFVAS AAARDALSPI FAKLAAAAAA QYNGADHRGA GFAATQQIIP 420 ISARLFVFGV SKKRTTELDL RRHFKRYGYV ADIWLRRRGG YAFLYIEIAQ PKLPVERPMA 480 KYLCQRVCPV DNSLVRIGDR VLSTLALLGN YYKASDYITN LRRYGFMEGN MLMFDSVVDY 540 ISEDCQRCSV SSVVKKSDAN KPAVHYGNNI SSTTPSVGDD ATAKFCRYCL QFVAPGDSSN 600 CGELIHNDSS LIYQESFRRF NYGLKINDKW FPVGAFVGDM SSAEAEELEN FYRPLSICRL 660 KDDQIGLAGR MMFGSGAAAG TVATTRSLAL AAPVPRGATS VLARPTATAD FVPSSRDTVY 720 VPVGHHVVNL LPIGHHVNLG SASAGDATIS SSGAPAGAYQ YMTNPYDAMI NSSALAVAGA 780 HPHMVNPPYV GASSSRLPTA SAECYRDWLE WLHDTMAEQQ QPPPPVQFKS HHLAPSTDMA 840 DPNGHHRRLP AGAPGRLNLG SATADFVPSS RDTIYVPASR DNPLLPIGQF PQDHVKSGSA 900 SAAGNDSARD FSSSRRLDVI AEAQGAAWGW DALWEDTGFA HCLRDPKTVL CWRYMYGGDD 960 YCDLGRDCFD AHGYNDLQSK IRTGVAAASR SYSVPHPDLD LDLSDVSQFA GVFSSQQQPP 1020 ASDEWNFAVG NMQQQQQRSM TPSASSRAAA ATDADGEDPP PPPPHPPSPS AEGSASPPTT 1080 PGTPTTGADE KNVGELNDVD YPLLLPDAPA PAPAPAPAPP PPPPPPRPRP RPTTMRSRKA 1140 RLCERWMQDG ECPNGNGCHD AHGLEDQIRV AVKKTTDRGH RHTTQGTIKP ISTKQYSD

Sequence ? help Back to Top

Protein Sequence Length: 1198 aa Download sequence Send to blast

MAGDDADRNR PGRGRESLPG GATSSSSPPC SNFDGLNAQA ATSIPAAFGS GPTTTTTGGG  60
DSPGDSSRIA SHLVELEDTR RSADFVPSRH DAIYVPSGRP NPLRPIGHRE DYYSGSGSAT  120
AFFPISRDPV HVPISRDIAL PPIGHPSQGR LKSGSSSASA GDDMINSSAA VSHSTGAGGG  180
FSSRHAPASD EAKKQQRAMA IRRQQQQQQQ LQLAMEIWRQ QQQQLAAAMW QEQQQQEDEM  240
AIRKQQKQDR SMVFWQQLRA MTPSSASSSS SSSSAAVADN LAPSAAAAAE GSPSPTTPTT  300
GADQKNVGGD NDADYRRLPE HMSTTNDEAT TSSTSSSPPS ELLDALDTVA KAVGDAVRFA  360
FKMDPKTTFL AHGLADFVAS AAARDALSPI FAKLAAAAAA QYNGADHRGA GFAATQQIIP  420
ISARLFVFGV SKKRTTELDL RRHFKRYGYV ADIWLRRRGG YAFLYIEIAQ PKLPVERPMA  480
KYLCQRVCPV DNSLVRIGDR VLSTLALLGN YYKASDYITN LRRYGFMEGN MLMFDSVVDY  540
ISEDCQRCSV SSVVKKSDAN KPAVHYGNNI SSTTPSVGDD ATAKFCRYCL QFVAPGDSSN  600
CGELIHNDSS LIYQESFRRF NYGLKINDKW FPVGAFVGDM SSAEAEELEN FYRPLSICRL  660
KDDQIGLAGR MMFGSGAAAG TVATTRSLAL AAPVPRGATS VLARPTATAD FVPSSRDTVY  720
VPVGHHVVNL LPIGHHVNLG SASAGDATIS SSGAPAGAYQ YMTNPYDAMI NSSALAVAGA  780
HPHMVNPPYV GASSSRLPTA SAECYRDWLE WLHDTMAEQQ QPPPPVQFKS HHLAPSTDMA  840
DPNGHHRRLP AGAPGRLNLG SATADFVPSS RDTIYVPASR DNPLLPIGQF PQDHVKSGSA  900
SAAGNDSARD FSSSRRLDVI AEAQGAAWGW DALWEDTGFA HCLRDPKTVL CWRYMYGGDD  960
YCDLGRDCFD AHGYNDLQSK IRTGVAAASR SYSVPHPDLD LDLSDVSQFA GVFSSQQQPP  1020
ASDEWNFAVG NMQQQQQRSM TPSASSRAAA ATDADGEDPP PPPPHPPSPS AEGSASPPTT  1080
PGTPTTGADE KNVGELNDVD YPLLLPDAPA PAPAPAPAPP PPPPPPRPRP RPTTMRSRKA  1140
RLCERWMQDG ECPNGNGCHD AHGLEDQIRV AVKKTTDRGH RHTTQGTIKP ISTKQYSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003829	0.0	AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBank	AP004314	0.0	AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0AK06	0.0	A0A0E0AK06_9ORYZ; Uncharacterized protein
STRING	OGLUM07G14320.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19103	2	2