PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G14590.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 585aa    MW: 67201.8 Da    PI: 6.5767
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G14590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-094267126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C+++ ++G Ck+G +C ++H+
  OGLUM07G14590.1 42 PGEPDCSYYVKFGSCKFGISCVYNHP 67
                     5789*********************9 PP
2zf-CCCH28.62.4e-0987112126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C+++ ++G Ck+G +C+F+H+
  OGLUM07G14590.1  87 PGEPDCSYYVKFGSCKFGMNCRFNHP 112
                      5789*********************9 PP
3zf-CCCH32.61.3e-10157178526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      lC++++  G+Ck+G +CkF H+
  OGLUM07G14590.1 157 LCSYYMNRGICKFGTNCKFDHP 178
                      8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6484169IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-44168IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-64367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5486114IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-486113IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-688112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981152180IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4152179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6152179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4155177IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-8157178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:1.25.40.1801.3E-21370490IPR016021MIF4G-like domain
PfamPF028545.8E-15371494IPR003890MIF4G-like, type 3
SuperFamilySSF483712.33E-20371497IPR016024Armadillo-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MPQDDDWFWA PTPVVVGETT SKPQPPVAGK TKKVEEQHPR RPGEPDCSYY VKFGSCKFGI  60
SCVYNHPDPR RQHGADDKKP EQFPRRPGEP DCSYYVKFGS CKFGMNCRFN HPTRMPVPPQ  120
EYFPGNACHC HHSEGKSKVE QVNLNVLGLP LRAGTWLCSY YMNRGICKFG TNCKFDHPDP  180
GSDHEKWVVS SNANQVSSQV NIYSVLDHEE SNEHTFTSEE VHQPRNPSFH KRISYTRDQL  240
LQLGQNVEVP KDILKFCQDT NVELNGEDKI SGFGAEKDHV QTPSYKRFDA IDSRDWHSRS  300
AQTNWEQKFW DKFSEAKQLY AISWKQEKFN KPDQSSFHFD SKVQDDPISV LVKAEVPLSI  360
QRGIISGKDE DVINLIFEMV VAEPAFCSMY AQLCTYLNQN LTPFPPEDCD CEEITFKQAL  420
LNKCQEIFES AHTVRAEIDK LIGQDREMEQ PDKERVVKLE TLGNIHFIRA LQKKKLITNK  480
IIDHIVQAVM DCGKFRFEPL GKVDLLNIIF EGMLDSDSAG AESNICVNVM IGGNKSSIAA  540
NDVEMTRKNW HRIQRYDTKC HYQTRLYPMS ENQLENTNSH QKLFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1015100.0AK101510.1 Oryza sativa Japonica Group cDNA clone:J033045L14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641849.10.0zinc finger CCCH domain-containing protein 43
RefseqXP_025882269.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ5Z5Q30.0C3H43_ORYSJ; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0E0AK400.0A0A0E0AK40_9ORYZ; Uncharacterized protein
STRINGOGLUM07G14590.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143301322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.13e-33zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]