PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G19030.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 285aa    MW: 31281 Da    PI: 8.2494
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G19030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.3e-06257279223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C+k F+++ +L+ H  + H
  OGLUM07G19030.1 257 VCPKCSKAFRDPVLLVEHVERdH 279
                      7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.75E-7646No hitNo description
Gene3DG3DSA:4.10.1110.102.1E-41048IPR000058Zinc finger, AN1-type
SMARTSM001540.631347IPR000058Zinc finger, AN1-type
PfamPF014281.3E-61346IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.5E-1086144IPR000058Zinc finger, AN1-type
SuperFamilySSF1183103.53E-988140No hitNo description
SMARTSM001540.07396137IPR000058Zinc finger, AN1-type
PfamPF014283.4E-896135IPR000058Zinc finger, AN1-type
SMARTSM003550.31219242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280221242IPR007087Zinc finger, C2H2
SMARTSM003558256279IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767256284IPR007087Zinc finger, C2H2
PROSITE patternPS000280258279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGTPEFPNLG KHCSVGDCNQ IDFLPFTCDR CDHHRSYTSH QCPNANQKDV TVLICPLCAK  60
GVRLNPNEDP NITWDTHVNS DCDPSNYQKV TKKKKCPVPG CRETLTFSNT IRCKDCTKEH  120
CLKHRFGPDH KCPGPRKPES TFPFGNMLRR SQKAESHSNS NSSSTSSSWW SSSLLTAATS  180
FKSSAEAGMQ KLSTATTQAI QKAKDGISTS SSNSGDLVEQ CVQCPATFST VGALIEHCEK  240
SHQSNSQSSR SRVTVDVCPK CSKAFRDPVL LVEHVERDHG GTSRA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8291290.0CT829129.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN113H10, full insert sequence.
GenBankHQ3248180.0HQ324818.1 Oryza sativa Japonica Group clone KCS176H09 zinc finger AN1 and C2H2 domain-containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644892.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B90.0SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A0E0ALM00.0A0A0E0ALM0_9ORYZ; Uncharacterized protein
STRINGOGLUM07G19030.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]