PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G21090.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 321aa    MW: 34037.6 Da    PI: 5.4093
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G21090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013110132123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F ++   + H+r+H
  OGLUM07G21090.1 110 FPCHLCHKEFGSRKAVHGHMRVH 132
                      89********************6 PP
2zf-C2H211.60.00085214236123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk +++   L  H r+H
  OGLUM07G21090.1 214 HPCNVCGKEYPTGVALGGHKRKH 236
                      78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-5107136No hitNo description
Gene3DG3DSA:3.30.160.609.7E-4110169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.219110137IPR007087Zinc finger, C2H2
SMARTSM003550.046110132IPR015880Zinc finger, C2H2-like
PfamPF139120.007110134IPR007087Zinc finger, C2H2
PROSITE patternPS000280112133IPR007087Zinc finger, C2H2
SMARTSM003550.42168192IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-4170192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280170192IPR007087Zinc finger, C2H2
SuperFamilySSF576676.37E-5211239No hitNo description
PROSITE profilePS501578.974214241IPR007087Zinc finger, C2H2
SMARTSM003550.25214236IPR015880Zinc finger, C2H2-like
PfamPF139126.0E-10214238IPR007087Zinc finger, C2H2
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEGKSSSRHA DPLEEVEMNS ASETEDDDDC RYVIQSRRDN DNDDEEGMRP ATACKRRRRL  60
DDILALLPSP PTLSTSSGSE GTISDRDHGG DVIRAGDDAD PVAARQEASF PCHLCHKEFG  120
SRKAVHGHMR VHHAENEKEP PPPPPAAMPV LPQARLPAPG ASRSGGPYKC KYEGCNMEYK  180
THQGLGGHVA GHINRDKMAT ASGSGGAGKP EGKHPCNVCG KEYPTGVALG GHKRKHYRKD  240
LDLTLSLAPP GELAAPPTPA PAPAAIAAVE AEAEVAEDGD GGEPVPTTPS TGARRNVVVR  300
IWGVDVEKPV DDVEEQDGGS N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15459KRRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882681.11e-168zinc finger protein squeeze-like
TrEMBLA0A0E0AMB40.0A0A0E0AMB4_9ORYZ; Uncharacterized protein
STRINGOGLUM07G21090.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.14e-12C2H2 family protein