PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G21410.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 321aa    MW: 36405.2 Da    PI: 9.7722
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G21410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF983.9e-311059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rienk+nrqvtfskRrng+lKKA+E+SvLCda+va+i+fs++gklye+ss
  OGLUM07G21410.1 10 RIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSS 59
                     8***********************************************96 PP
2K-box935.1e-31841701096
            K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      +++++e++  e+  Lk++++ Lq++qR+llGe+L++L+ keLqqLe+qLe slk+iRskKn+ll+e+i+elqkkek+l+++n+ L+k
  OGLUM07G21410.1  84 NTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTTKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQK 170
                      467789*****************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.085161IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-39160IPR002100Transcription factor, MADS-box
CDDcd002659.67E-42274No hitNo description
SuperFamilySSF554552.09E-33291IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-30323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014869.6E-2885170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.39888196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRGPVQLRR IENKINRQVT FSKRRNGLLK KAHEISVLCD ADVALIVFST KGKLYEFSSH  60
SSMEGILERY QRYSFDERAV LEPNTEDQEN WGDEYGILKS KLDALQKSQR QLLGEQLDTL  120
TTKELQQLEH QLEYSLKHIR SKKNQLLFES ISELQKKEKS LKNQNNVLQK FTTKAVLEVK  180
PFCLHSSEQL METEKEKNNA IINTNREEQN GATPSTSSPT PVTAPDPIPT TNNRLPLSIT  240
SKPTKRIRGV RSSTVSGTSR QQQASAMDAP DKSHMKASVD LKRHSTQWPT STCFFQLRQP  300
PLCNPSSSDI DISAFGIANI Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-20174173MEF2 CHIMERA
6byy_B9e-20174173MEF2 CHIMERA
6byy_C9e-20174173MEF2 CHIMERA
6byy_D9e-20174173MEF2 CHIMERA
6bz1_A9e-20174173MEF2 CHIMERA
6bz1_B9e-20174173MEF2 CHIMERA
6bz1_C9e-20174173MEF2 CHIMERA
6bz1_D9e-20174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. {ECO:0000269|PubMed:11971906, ECO:0000269|PubMed:15299121}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0914580.0AF091458.1 Oryza sativa MADS box transcription factor MADS18 (MADS18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882796.11e-149MADS-box transcription factor 18 isoform X1
SwissprotA2YNI21e-150MAD18_ORYSI; MADS-box transcription factor 18
SwissprotQ0D4T41e-150MAD18_ORYSJ; MADS-box transcription factor 18
TrEMBLA0A0E0AMF40.0A0A0E0AMF4_9ORYZ; Uncharacterized protein
STRINGOGLUM07G21410.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.15e-75MIKC_MADS family protein
Publications ? help Back to Top
  1. Jia H, et al.
    Characterization and transcriptional profiles of two rice MADS-box genes.
    Plant Sci., 2000. 155(2): p. 115-122
    [PMID:10814814]
  2. Chen C, et al.
    Adapting rice anther culture to gene transformation and RNA interference.
    Sci. China, C, Life Sci., 2006. 49(5): p. 414-28
    [PMID:17172048]
  3. Yoshida H, et al.
    superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice.
    Plant Biotechnol. J., 2007. 5(6): p. 835-46
    [PMID:17764519]
  4. Yao SG,Ohmori S,Kimizu M,Yoshida H
    Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development.
    Plant Cell Physiol., 2008. 49(5): p. 853-7
    [PMID:18378529]
  5. Seok HY, et al.
    Rice ternary MADS protein complexes containing class B MADS heterodimer.
    Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
    [PMID:20888318]
  6. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  9. Lombardo F, et al.
    The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice.
    Plant Biotechnol. J., 2017. 15(1): p. 97-106
    [PMID:27336225]