PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G22660.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1032aa    MW: 115102 Da    PI: 5.8618
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G22660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.42.1e-56211372118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ ++rwl+++ei++iL n++k++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fq
  OGLUM07G22660.1  21 LEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQ 114
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+ywlLee + +ivlvhylevk
  OGLUM07G22660.1 115 RRTYWLLEEGFMNIVLVHYLEVK 137
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.9116142IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-5022136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.6E-5436523IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.71E-16437523IPR014756Immunoglobulin E-set
PfamPF018331.5E-4437510IPR002909IPT domain
SuperFamilySSF484031.71E-16624730IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-17629731IPR020683Ankyrin repeat-containing domain
CDDcd002047.14E-13630728No hitNo description
PROSITE profilePS5029717.263636730IPR020683Ankyrin repeat-containing domain
PfamPF127964.4E-7642731IPR020683Ankyrin repeat-containing domain
SMARTSM002480.055669698IPR002110Ankyrin repeat
PROSITE profilePS500889.618669701IPR002110Ankyrin repeat
SMARTSM00248670708737IPR002110Ankyrin repeat
SMARTSM000150.36842864IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.773843872IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.38E-7843893IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0056844863IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0096865887IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633866890IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-4868887IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1032 aa     Download sequence    Send to blast
MAEVRKYGLP NQPPDIPQIL LEAQNRWLRP TEICHILSNY KKFSIAPEPP NRPASGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEVKGGK QSFSRSKEAE ESAGLSNADS PACSNSFASQ SQVASQSMDA  180
ESPISGQISE YEDAETDNCR ASSRYHPFVE MQQPVDGVMM NNMLGVSAPR YHGEMQTTTA  240
NSDNHFATHY DIAGVFNEAG AGLRGVSKTL HDSVRFAEPY PEYSAEFMKP ALYSSNATME  300
SNNLDDNSRL ETFMSEALYT NNLTQKEADA LSAAGIMSSQ AENNSYTDGI RYPLLKQSSL  360
DLFKIEPDGL KKFDSFSRWM SSELPEVADL DIKSSSDAFW SSTETVNVAD GTSIPINEQL  420
DAFAVSPSLS QDQLFSIIDV SPSYACTGSR NKVLITGTFL ANKEHVENCK WSCMFGDVEV  480
PAEVLAHGSL RCYTPVHLSG RVPFYVTCSN RVACSEVREF EFRDSDARQM DTSDPQTTGI  540
NEMHLHIRLE KLLSLGPDDY EKYVMSDGKE KSEIINTISS LMLDDKCLNQ AVPLDEKEVS  600
TARDQNIEKL VKEKLYCWLV HKVHDEDKGP NVLGKEGQGV IHLVAALGYD WAVRPIITAG  660
VKVNFRDARG WTALHWAASC GRERTVGALI ANGAESGLLT DPTPQFPAGR TAADLASENG  720
HKGIAGFLAE SALTSHLSAL TLKESKDGNV KEICGLGGAE DFAESSSSQL AYRDSQAESL  780
KDSLSAVRKS TQAAARIFQA FRVESFHRKK VVEYGDDDCG LSDEHTLSLV SIKNAKPGQN  840
DGAHSAAVRI QNKFRGWKGR KEFMIIRQKI VKIQAHVRGH QVRKSYRRIV WSVGIVEKII  900
LRWRRKRRGL RGFQPVKQLE GPSPIQQLEG PSQIQTAKEE EEDEYDYLKD GRKQAEGRLQ  960
RALARVKSMT QYPEAREQYS RIANRVTELQ EPQAMMIQDD MQSDGAIADG GDFMAELEEL  1020
CGDGDAPMPT IL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084610.0AK108461.1 Oryza sativa Japonica Group cDNA clone:002-143-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A0E0AMW00.0A0A0E0AMW0_9ORYZ; Uncharacterized protein
STRINGOGLUM07G22660.30.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.10.0ethylene induced calmodulin binding protein