PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G22660.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1049aa    MW: 116765 Da    PI: 5.9321
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G22660.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.42.2e-56211372118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ ++rwl+++ei++iL n++k++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fq
  OGLUM07G22660.3  21 LEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQ 114
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+ywlLee + +ivlvhylevk
  OGLUM07G22660.3 115 RRTYWLLEEGFMNIVLVHYLEVK 137
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.9116142IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038593.5E-5022136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.7E-5453540IPR013783Immunoglobulin-like fold
PfamPF018331.5E-4454527IPR002909IPT domain
SuperFamilySSF812961.87E-16454540IPR014756Immunoglobulin E-set
SuperFamilySSF484031.71E-16641747IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-17646748IPR020683Ankyrin repeat-containing domain
CDDcd002047.30E-13647745No hitNo description
PROSITE profilePS5029717.263653747IPR020683Ankyrin repeat-containing domain
PfamPF127964.5E-7659748IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.618686718IPR002110Ankyrin repeat
SMARTSM002480.055686715IPR002110Ankyrin repeat
SMARTSM00248670725754IPR002110Ankyrin repeat
SMARTSM000150.36859881IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.41E-7860910IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.773860889IPR000048IQ motif, EF-hand binding site
PfamPF006120.0057861880IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0096882904IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633883907IPR000048IQ motif, EF-hand binding site
PfamPF006122.5E-4885904IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1049 aa     Download sequence    Send to blast
MAEVRKYGLP NQPPDIPQIL LEAQNRWLRP TEICHILSNY KKFSIAPEPP NRPASGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEVKGGK QSFSRSKEAE ESAGLSNADS PACSNSFASQ SQVASQSMDA  180
ESPISGQISE YEDAETGLAV SLSSVSKEKF GATDNCRASS RYHPFVEMQQ PVDGVMMNNM  240
LGVSAPRYHG EMQTTTANSD NHFATHYDIA GVFNEAGAGL RGVSKTLHDS VRFAEPYPEY  300
SAEFMKPALY SSNATMESNN LDDNSRLETF MSEALYTNNL TQKEADALSA AGIMSSQAEN  360
NSYTDGIRYP LLKQSSLDLF KIEPDGLKKF DSFSRWMSSE LPEVADLDIK SSSDAFWSST  420
ETVNVADGTS IPINEQLDAF AVSPSLSQDQ LFSIIDVSPS YACTGSRNKV LITGTFLANK  480
EHVENCKWSC MFGDVEVPAE VLAHGSLRCY TPVHLSGRVP FYVTCSNRVA CSEVREFEFR  540
DSDARQMDTS DPQTTGINEM HLHIRLEKLL SLGPDDYEKY VMSDGKEKSE IINTISSLML  600
DDKCLNQAVP LDEKEVSTAR DQNIEKLVKE KLYCWLVHKV HDEDKGPNVL GKEGQGVIHL  660
VAALGYDWAV RPIITAGVKV NFRDARGWTA LHWAASCGRE RTVGALIANG AESGLLTDPT  720
PQFPAGRTAA DLASENGHKG IAGFLAESAL TSHLSALTLK ESKDGNVKEI CGLGGAEDFA  780
ESSSSQLAYR DSQAESLKDS LSAVRKSTQA AARIFQAFRV ESFHRKKVVE YGDDDCGLSD  840
EHTLSLVSIK NAKPGQNDGA HSAAVRIQNK FRGWKGRKEF MIIRQKIVKI QAHVRGHQVR  900
KSYRRIVWSV GIVEKIILRW RRKRRGLRGF QPVKQLEGPS PIQQLEGPSQ IQTAKEEEED  960
EYDYLKDGRK QAEGRLQRAL ARVKSMTQYP EAREQYSRIA NRVTELQEPQ AMMIQDDMQS  1020
DGAIADGGDF MAELEELCGD GDAPMPTIL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084610.0AK108461.1 Oryza sativa Japonica Group cDNA clone:002-143-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A0E0AMW20.0A0A0E0AMW2_9ORYZ; Uncharacterized protein
STRINGOGLUM07G22660.30.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein