PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G22660.5
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1010aa    MW: 112778 Da    PI: 6.37
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G22660.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.42.1e-56211372118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ ++rwl+++ei++iL n++k++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fq
  OGLUM07G22660.5  21 LEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQ 114
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+ywlLee + +ivlvhylevk
  OGLUM07G22660.5 115 RRTYWLLEEGFMNIVLVHYLEVK 137
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.9116142IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038593.3E-5022136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.4E-5414501IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.71E-16415501IPR014756Immunoglobulin E-set
PfamPF018331.4E-4415488IPR002909IPT domain
SuperFamilySSF484031.71E-16602708IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-17607709IPR020683Ankyrin repeat-containing domain
CDDcd002046.93E-13608706No hitNo description
PROSITE profilePS5029717.263614708IPR020683Ankyrin repeat-containing domain
PfamPF127964.2E-7620709IPR020683Ankyrin repeat-containing domain
SMARTSM002480.055647676IPR002110Ankyrin repeat
PROSITE profilePS500889.618647679IPR002110Ankyrin repeat
SMARTSM00248670686715IPR002110Ankyrin repeat
SMARTSM000150.36820842IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.773821850IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.33E-7821871IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0054822841IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0096843865IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633844868IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-4846865IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1010 aa     Download sequence    Send to blast
MAEVRKYGLP NQPPDIPQIL LEAQNRWLRP TEICHILSNY KKFSIAPEPP NRPASGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEVKGGK QSFSRSKEAE ESAGLSNADS PACSNSFAKK FGATDNCRAS  180
SRYHPFVEMQ QPVDGVMMNN MLGVSAPRYH GEMQTTTANS DNHFATHYDI AGVFNEAGAG  240
LRGVSKTLHD SVRFAEPYPE YSAEFMKPAL YSSNATMESN NLDDNSRLET FMSEALYTNN  300
LTQKEADALS AAGIMSSQAE NNSYTDGIRY PLLKQSSLDL FKIEPDGLKK FDSFSRWMSS  360
ELPEVADLDI KSSSDAFWSS TETVNVADGT SIPINEQLDA FAVSPSLSQD QLFSIIDVSP  420
SYACTGSRNK VLITGTFLAN KEHVENCKWS CMFGDVEVPA EVLAHGSLRC YTPVHLSGRV  480
PFYVTCSNRV ACSEVREFEF RDSDARQMDT SDPQTTGINE MHLHIRLEKL LSLGPDDYEK  540
YVMSDGKEKS EIINTISSLM LDDKCLNQAV PLDEKEVSTA RDQNIEKLVK EKLYCWLVHK  600
VHDEDKGPNV LGKEGQGVIH LVAALGYDWA VRPIITAGVK VNFRDARGWT ALHWAASCGR  660
ERTVGALIAN GAESGLLTDP TPQFPAGRTA ADLASENGHK GIAGFLAESA LTSHLSALTL  720
KESKDGNVKE ICGLGGAEDF AESSSSQLAY RDSQAESLKD SLSAVRKSTQ AAARIFQAFR  780
VESFHRKKVV EYGDDDCGLS DEHTLSLVSI KNAKPGQNDG AHSAAVRIQN KFRGWKGRKE  840
FMIIRQKIVK IQAHVRGHQV RKSYRRIVWS VGIVEKIILR WRRKRRGLRG FQPVKQLEGP  900
SPIQQLEGPS QIQTAKEEEE DEYDYLKDGR KQAEGRLQRA LARVKSMTQY PEAREQYSRI  960
ANRVTELQEP QAMMIQDDMQ SDGAIADGGD FMAELEELCG DGDAPMPTIL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084610.0AK108461.1 Oryza sativa Japonica Group cDNA clone:002-143-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A0E0AMW40.0A0A0E0AMW4_9ORYZ; Uncharacterized protein
STRINGOGLUM07G22660.30.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein