PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G22980.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 569aa    MW: 63185.4 Da    PI: 4.4126
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G22980.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-1132107348
                      SS-HHHHHHHHHHHHHTTTT...............................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...............................tWktIartmgkgRtlkqcksrwqkyl 48 
                      +W+teEd+ l   ++++G++                               +W+ Ia+ +   +t+ qc+ rw++yl
  OGLUM07G22980.2  32 SWSTEEDDVLRTQIALHGTDkyeffplpisidfffldlitifytvfpfpfgSWTIIAAQFK-DKTARQCRRRWYNYL 107
                      6***********************************************************9.**************7 PP
2Myb_DNA-binding41.53e-13113156146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g W+ eEd+ll +a k lG++ W+ Ia+ +  gRt++ +k+r+ +
  OGLUM07G22980.2 113 KGGWSREEDLLLCEAQKVLGNK-WTEIAKVVS-GRTDNAVKNRFST 156
                      688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.0E-629109IPR001005SANT/Myb domain
PROSITE profilePS500908.50232107IPR017877Myb-like domain
PfamPF002492.6E-932107IPR001005SANT/Myb domain
CDDcd001671.39E-632107No hitNo description
Gene3DG3DSA:1.10.10.601.5E-153352IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-1584114IPR009057Homeodomain-like
SuperFamilySSF466895.47E-2587165IPR009057Homeodomain-like
PROSITE profilePS5129420.432108162IPR017930Myb domain
SMARTSM007173.5E-13112160IPR001005SANT/Myb domain
PfamPF002491.9E-11113156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-19115161IPR009057Homeodomain-like
CDDcd001671.90E-9116157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MATGPDLTPP AAAASAEAPS ASAAKKDRHI VSWSTEEDDV LRTQIALHGT DKYEFFPLPI  60
SIDFFFLDLI TIFYTVFPFP FGSWTIIAAQ FKDKTARQCR RRWYNYLNSE CKKGGWSREE  120
DLLLCEAQKV LGNKWTEIAK VVSGRTDNAV KNRFSTLCKR RAKDDELFKE NGSLCSSTSA  180
KRALAQTGCL TSGASGSAPP IKQMRPCNSD FKENMTPNMR LVGQDKSTQD SRQPLAIVYQ  240
NNQDNMNTMD TQNLVAKTAA KQLLAGEQNC VKHEGNFLNK DDPKIATLLQ RADLLCSLAT  300
KINTENTSQS MDEAWQQLQH HLDKKDDNDM SESSMSGMAS LLEDLDDLIV DPYENEEEED  360
QDLREQTEQI DVENKQNSSQ TSMEVTSQMV PDNKMEDCPN DKSTEDNNME PCPGEDIPTS  420
ENLTEAAIED SLLQCVEYSS PVHTVIQAKT DAEIAASENL SEVLEHNRLQ CIQLASPAQT  480
TTPVEANAET PASEKLSEVV KCNNPSCIEF TSPAHTVPTF LPYADDMPTP KFTASERNFL  540
LSVLELTSPG SRPDTSQQPS CKRALLNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-258416130107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634260.0AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882808.10.0transcription factor MYB124 isoform X1
TrEMBLA0A0E0AMZ90.0A0A0E0AMZ9_9ORYZ; Uncharacterized protein
STRINGOGLUM07G22980.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.23e-76MYB family protein