PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G00660.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 306aa    MW: 32529.2 Da    PI: 6.8869
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G00660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09172212954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  OGLUM08G00660.1 172 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 212
                      699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15168224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-15169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13169222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-7173212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-6186217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDNMTHNSSS SSSWDLDMSL GSHHHPLLFD QPPPPPPPPP PPPLPFHLHH HPLDPSPSSS  60
LFPPPPHHHH HAHHLHHPLD LDQRRGHHDY GGGDQGGDEE LRLQQEAAAG GGGGGQDGGG  120
GGDQDADEEL GAMKEMMYRI AAMQPVDIDP ATIKKPRRRN VRISDDPQSV AARHRRERIS  180
ERIRILQRLV PGGTKMDTAS MLDEAIRYIK FLKRQVQELQ HQPGPPPPPY PAGASPAAGP  240
STSAVGPPGR PFLPLGGGGP MIDWVGLTRP VDIHGPTSSS SSSSMGGALG FGFGGGGGGQ  300
SSHGMH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044620.0AP004462.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0450B04.
GenBankAP0045840.0AP004584.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0007D08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649611.10.0transcription factor HEC2
TrEMBLA0A0E0APZ40.0A0A0E0APZ4_9ORYZ; Uncharacterized protein
STRINGOGLUM08G00660.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.12e-37bHLH family protein