PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G03690.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 175aa    MW: 18064 Da    PI: 7.6708
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G03690.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.74.4e-145983125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr+lL+YP+GA+sV+Ca+C tV
  OGLUM08G03690.2 59 CSGCRNLLMYPAGATSVCCAVCSTV 83
                     ***********************99 PP
2zf-LSD146.46.4e-1598122125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      CggC+tlL+Y rGA+sV+C++C+tV
  OGLUM08G03690.2  98 CGGCHTLLMYIRGATSVQCSCCHTV 122
                      ************************9 PP
3zf-LSD141.52.2e-13136160125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Cr lL+Y +GA+sV+Ca+C++V
  OGLUM08G03690.2 136 CGNCRMLLMYQYGARSVKCAVCNFV 160
                      ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.108.7E-555157No hitNo description
TIGRFAMsTIGR010531.4E-135686IPR005735Zinc finger, LSD1-type
SuperFamilySSF486956.56E-559157IPR011031Multihaem cytochrome
PfamPF069432.4E-115983IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.2E-1495124IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-1298122IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.4E-12133163IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-12136160IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MTERKGDFSC LTAARICEAS TSDAVIQAAG TAMPVPLAPY PTPPVPFTPP NGAQSQLVCS  60
GCRNLLMYPA GATSVCCAVC STVTAVPAPG TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH  120
TVNLAMEANQ VAHVNCGNCR MLLMYQYGAR SVKCAVCNFV TSVGASPGTD QKPSS
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117590.0AK111759.1 Oryza sativa Japonica Group cDNA clone:J023055E16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648106.11e-122protein LSD1 isoform X3
RefseqXP_015648107.11e-122protein LSD1 isoform X3
SwissprotQ0J7V91e-124LSD1_ORYSJ; Protein LSD1
TrEMBLA0A0E0AR361e-123A0A0E0AR36_9ORYZ; Uncharacterized protein
STRINGOGLUM08G03690.11e-122(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-61lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]