PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G03750.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 167aa MW: 18216.2 Da PI: 5.8134

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G03750.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.6	4.3e-31	1	52	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rWt++LH+rFv+ave LGG+++AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ OGLUM08G03750.1 1 MRWTSTLHARFVHAVELLGGHDRATPKSVLELMDVKDLTLAHVKSHLQMYRT 52 79*************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.02E-15	1	53	IPR009057	Homeodomain-like
Pfam	PF00249	6.5E-7	1	51	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-27	1	53	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-23	1	52	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MRWTSTLHAR FVHAVELLGG HDRATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKNTERPA 60 ASSDQADGFE NGSAGEICDE NSLDLHGGCR PEAMSAAATA AAAARHGRED WSGFHESNTG 120 TMQTLKDMQS KSLEILSDMN SCVSETTSST SELNLEFTLG RPQNRPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-17	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-17	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-17	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-17	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-17	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-17	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-17	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-17	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-17	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-17	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-17	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-17	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095689	1e-128	FP095689.1 Phyllostachys edulis cDNA clone: bphylf026d19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648944.1	1e-113	probable transcription factor KAN2 isoform X2
Swissprot	Q9C616	1e-38	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A0E0AR44	1e-121	A0A0E0AR44_9ORYZ; Uncharacterized protein
TrEMBL	B8BAX4	1e-119	B8BAX4_ORYSI; Uncharacterized protein
STRING	OGLUM08G03750.1	1e-122	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4721	36	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-40	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]