PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G04040.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 192aa    MW: 21011.2 Da    PI: 4.3582
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G04040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.92.9e-32141191100
           DUF260   1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.....edamsslvyeAearardPvyGavgvilklqqqle 88 
                      aCaaC++++  +C+++C lapyfpa++pk+f++++ +FG++++l + +a ++  r      + m+++vy A+ar++dP+ Ga+g i+klqqql+
  OGLUM08G04040.1  14 ACAACAHQGAsSCPPNCGLAPYFPADKPKRFWYARLMFGMERILGFSEAEKQGIRpngstVISMAAVVYLADARVEDPILGAYGRIRKLQQQLD 107
                      7********999************************************976555666666899******************************* PP

           DUF260  89 qlkaelallkee 100
                      +lkae a+++++
  OGLUM08G04040.1 108 RLKAERARQHHP 119
                      *******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.48913120IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-2314116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MASPSPPTTT TQQACAACAH QGASSCPPNC GLAPYFPADK PKRFWYARLM FGMERILGFS  60
EAEKQGIRPN GSTVISMAAV VYLADARVED PILGAYGRIR KLQQQLDRLK AERARQHHPA  120
TASPAPADNV ALEPEPEPFH QPPAQPSTPP ALAIPDEDEE EEEDDDDDED EEEEGHAPVD  180
DDVPCAKRRR TN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056050.0AP005605.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_C01.
GenBankAP0058470.0AP005847.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ9990_A01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649522.17e-77LOB domain-containing protein 1
TrEMBLA0A0E0AR791e-137A0A0E0AR79_9ORYZ; Uncharacterized protein
STRINGOGLUM08G04040.11e-138(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16910911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.14e-13LOB domain-containing protein 22