PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G04530.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 274aa    MW: 29611.9 Da    PI: 6.6917
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G04530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.4e-1178134155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++ k++g+++A+++d  s+  g krk  + g++ t+e Aa+a++ a++k++g
  OGLUM08G04530.1  78 SRYHGVTRLKWSGKFEAHLWDnTSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 134
                      79*******************55558777778888.999999**************98 PP
2AP250.16.7e-16179233156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      s y+GV+++k +grW A+I    e +    k ++lg+f t+ eAa+a++ a+ +l+g+
  OGLUM08G04530.1 179 SSYRGVTRRK-DGRWQARIGRIGEsR--DtKDIYLGTFETEIEAAEAYDLAAIELRGA 233
                      67*****999.9******99953323..36**********99*************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-878134IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1178145IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-1079145IPR001471AP2/ERF domain
PROSITE profilePS5103215.75179144IPR001471AP2/ERF domain
SMARTSM003802.3E-1379150IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-17179242IPR016177DNA-binding domain
PfamPF008471.3E-11179232IPR001471AP2/ERF domain
CDDcd000184.52E-20179242No hitNo description
Gene3DG3DSA:3.30.730.102.7E-19180240IPR001471AP2/ERF domain
PROSITE profilePS5103218.518180240IPR001471AP2/ERF domain
SMARTSM003803.8E-25180246IPR001471AP2/ERF domain
PRINTSPR003674.1E-8181192IPR001471AP2/ERF domain
PRINTSPR003674.1E-8222242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MATVQPAASD PAPPPPPETE EQPAAAGGEE IAALDEQLAV ADGGGDDGKA AAAAEGGGGG  60
GGKLVAETMR KYAAPRSSRY HGVTRLKWSG KFEAHLWDNT SQVEGRKRKG KHGSYVTEEN  120
AARAHDLAAL KYWGAGPNTK LNFNVSDYEK EIERMKTMSQ DEFVVYIRRQ SSCFSRGTSS  180
YRGVTRRKDG RWQARIGRIG ESRDTKDIYL GTFETEIEAA EAYDLAAIEL RGAHAVTNFD  240
ISNYCEDGLK KLEASSEVPK LLEGPSKAAK LAGR
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851180.0AY685118.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D9 (AP2D9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650903.11e-154AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z022e-65CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0E0ARD70.0A0A0E0ARD7_9ORYZ; Uncharacterized protein
STRINGOGLUM08G04530.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.14e-66AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]