PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G04900.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 170aa    MW: 18898.3 Da    PI: 10.3671
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G04900.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.25.6e-1194133241
                      XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 
                      +++k +rr+++NReAAr+sR+RKka+i++Le+   +L   
  OGLUM08G04900.3  94 PRDKIQRRLAQNREAARKSRLRKKAYIQNLETSRMKLAHL 133
                      57999**************************855555443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.0E-891145No hitNo description
SMARTSM003381.5E-693157IPR004827Basic-leucine zipper domain
PfamPF001701.5E-795133IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.6895147IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-797143No hitNo description
PROSITE patternPS000360100115IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MRERDASSPL AGRGAGESSS GLFRAPYPLN RTSSDTSNAA AAAMVVAPPP LTEPKFESQL  60
ALPLQHGDDQ DDAAALQESP RHASDSFEQE ASKPRDKIQR RLAQNREAAR KSRLRKKAYI  120
QNLETSRMKL AHLEQEITRA RQQVRTKKIK RKPACDEQIL LHGCPLLTYG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1092940.0AK109294.1 Oryza sativa Japonica Group cDNA clone:002-188-D03, full insert sequence.
GenBankCT8332870.0CT833287.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN040G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883355.15e-55transcription factor TGAL10-like isoform X3
RefseqXP_025883356.15e-55transcription factor TGAL10-like isoform X3
SwissprotQ6ZBS83e-56TGL10_ORYSJ; Transcription factor TGAL10
TrEMBLA0A0E0ARI41e-120A0A0E0ARI4_9ORYZ; Uncharacterized protein
STRINGOGLUM08G04900.14e-94(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.27e-24TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]