PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G04900.4
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 127aa    MW: 14561.7 Da    PI: 10.3166
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G04900.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1353.2e-115191242
                     XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42
                     +++k +rr+++NReAAr+sR+RKka+i++Le+   +L    
  OGLUM08G04900.4 51 PRDKIQRRLAQNREAARKSRLRKKAYIQNLETSRMKLAHLE 91
                     57999**************************8655554433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-847102No hitNo description
SMARTSM003381.5E-650114IPR004827Basic-leucine zipper domain
PfamPF001708.3E-85291IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.6852104IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.5E-754101No hitNo description
PROSITE patternPS0003605772IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MVVAPPPLTE PKFESQLALP LQHGDDQDDA AALQESPRHA SDSFEQEASK PRDKIQRRLA  60
QNREAARKSR LRKKAYIQNL ETSRMKLAHL EQEITRARQQ VRTKKIKRKP ACDEQILLHG  120
CPLLTYG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1092941e-167AK109294.1 Oryza sativa Japonica Group cDNA clone:002-188-D03, full insert sequence.
GenBankCT8332871e-167CT833287.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN040G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883355.11e-61transcription factor TGAL10-like isoform X3
RefseqXP_025883356.11e-61transcription factor TGAL10-like isoform X3
SwissprotQ6ZBS89e-63TGL10_ORYSJ; Transcription factor TGAL10
TrEMBLA0A0E0ARI44e-87A0A0E0ARI4_9ORYZ; Uncharacterized protein
STRINGOGLUM08G04900.17e-62(Oryza glumipatula)
STRINGOBART08G04650.12e-63(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.27e-25TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]