PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G05080.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 506aa    MW: 51537 Da    PI: 6.9949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G05080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.000594034312154
                      HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  21 eeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        L++l+ +      +K + a++L +++eYIk L
  OGLUM08G05080.1 403 TALQQLVSPF-----GKTDTASVLHETIEYIKFL 431
                      5566666665.....89***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.467382431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-10393451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-7394453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.45E-4394435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MADHQEMIHA AAAPAMYGGG GAAAGGATTT TGSHGGGGGD WWSAAVSSCS APAPETMQGF  60
GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGGGG GVADPAAIAV  120
HAQTVAAGGG GGGVADPAAI AVHAQTVAAG GGGGGWNQQP FLDGSGFHGY MSSSRNDHHT  180
NHHHHQINTP SLMSNSSSNN GVMLQEHQHD QNYQFLSNLG FELLSSPTSP YGGGGGFRSS  240
LLRSLTEPAA AAKPNDSPGF QQYHHHQPAM NLQPPAAAAG REPLQFTNST AAPFWNPSSG  300
FTVAAEGTAL GGAGASPAQP TPASLAAKRA LEGVGDSSSI ITKKAKADST PLKKSRTGTP  360
SPLPTTFKAC VYIYIIFNLS QMMIDFLPIK FHVRKEKLGD RVTALQQLVS PFGKTDTASV  420
LHETIEYIKF LHDQVGALSA PYLKNRQQVP HLKNSTGVDN DGGEATAASK RDLTGRGLCL  480
VPISSTFAVA SETPVDFWTP FGAAFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.10.0transcription factor bHLH112 isoform X2
TrEMBLA0A0E0ARL50.0A0A0E0ARL5_9ORYZ; Uncharacterized protein
STRINGOGLUM08G05080.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.13e-39bHLH family protein