PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G05080.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 358aa    MW: 37057.7 Da    PI: 6.7992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G05080.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.000192442831054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + R +++ ++   L++l+ +      +K + a++L +++eYIk L
  OGLUM08G05080.2 244 KVRKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 283
                      556667777777888888887.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-12233303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.351234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.71E-6237287No hitNo description
Gene3DG3DSA:4.10.280.107.2E-9239305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-4240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MADHQEMIHA AAAPAMYGGG GAAAGGATTT TGSHGGGGGD WWSAAVSSCS APAPETMQGF  60
GGWSAAVVAV DGGGNTSRDG SGFHGYMSSS RNDHHTNHHH HQINTPSLMS NSSSNNGVML  120
QEHQHDQNYQ FLSNLGFELL SSPTSPYGGG GGFRSSLLRS LTEPAAAAKP NDSPGFQQYH  180
HHQPAMNLQP PAAAAGREPL QFTNSTAAPF WNPSSGFTVA AEGTALGGAG ASPAQPTPAS  240
LAAKVRKEKL GDRVTALQQL VSPFGKTDTA SVLHETIEYI KFLHDQVGAL SAPYLKNRQQ  300
VPHLKNSTGV DNDGGEATAA SKRDLTGRGL CLVPISSTFA VASETPVDFW TPFGAAFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.10.0transcription factor bHLH112 isoform X2
TrEMBLA0A0E0ARL60.0A0A0E0ARL6_9ORYZ; Uncharacterized protein
STRINGONIVA08G04680.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-37bHLH family protein