PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G05080.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 442aa    MW: 44479.7 Da    PI: 6.5056
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G05080.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000253283671054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + R +++ ++   L++l+ +      +K + a++L +++eYIk L
  OGLUM08G05080.3 328 KVRKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 367
                      556667777777888888887.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-12317387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.351318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-5321371No hitNo description
Gene3DG3DSA:4.10.280.101.0E-8323389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-4324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MADHQEMIHA AAAPAMYGGG GAAAGGATTT TGSHGGGGGD WWSAAVSSCS APAPETMQGF  60
GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGGGG GVADPAAIAV  120
HAQTVAAGGG GGGVADPAAI AVHAQTVAAG GGGGGWNQQP FLDGSGFHGY MSSSRNDHHT  180
NHHHHQINTP SLMSNSSSNN GVMLQEHQHD QNYQFLSNLG FELLSSPTSP YGGGGGFRSS  240
LLRSLTEPAA AAKPNDSPGF QQYHHHQPAM NLQPPAAAAG REPLQFTNST AAPFWNPSSG  300
FTVAAEGTAL GGAGASPAQP TPASLAAKVR KEKLGDRVTA LQQLVSPFGK TDTASVLHET  360
IEYIKFLHDQ VGALSAPYLK NRQQVPHLKN STGVDNDGGE ATAASKRDLT GRGLCLVPIS  420
STFAVASETP VDFWTPFGAA FR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.10.0transcription factor bHLH112 isoform X2
TrEMBLA0A0E0ARL70.0A0A0E0ARL7_9ORYZ; Uncharacterized protein
STRINGONIVA08G04680.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.15e-37bHLH family protein