PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G05950.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YA

Protein Properties

Length: 192aa MW: 20582.3 Da PI: 10.1618

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G05950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.7	7e-32	82	137	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ep+YVNa+Qy++Il+RRq+Rak+e+e+k +k rkpylheSRh hAl+R+RgsgGrF OGLUM08G05950.1 82 EPIYVNARQYHGILRRRQSRAKAESENKA-NKIRKPYLHESRHLHALKRARGSGGRF 137 8**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.0E-33	79	140	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.965	80	140	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.4E-27	82	137	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	8.4E-24	83	105	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	8.4E-24	114	137	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MKPDGETQLR PTAAGHPDPG LGTSSAEYVA PVGPATAPVA YPYIGTYYGG IYGAYSGQPL 60 VNAALMAMPP HSVPLVTDAV VEPIYVNARQ YHGILRRRQS RAKAESENKA NKIRKPYLHE 120 SRHLHALKRA RGSGGRFLNS KAVEGKQDTK SVDKKDGAVP SEKRDNKLAN NIIKLENSSP 180 TTQPGAVASD VV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-20	80	141	1	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB288027	0.0	AB288027.1 Oryza sativa Japonica Group OsHAP2A mRNA for HAP2 subunit of HAP complex, complete cds.
GenBank	AK059903	0.0	AK059903.1 Oryza sativa Japonica Group cDNA clone:006-208-G09, full insert sequence.
GenBank	HQ731479	0.0	HQ731479.1 Oryza sativa Japonica Group NF-Y transcription factor 21 (NF-Y18) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648196.1	1e-130	nuclear transcription factor Y subunit A-4 isoform X1
Swissprot	Q84JP1	4e-37	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A0D3GX80	1e-137	A0A0D3GX80_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0ARX0	1e-137	A0A0E0ARX0_9ORYZ; Uncharacterized protein
TrEMBL	I1QGD3	1e-137	I1QGD3_ORYGL; Uncharacterized protein
STRING	OGLUM08G05950.1	1e-137	(Oryza glumipatula)
STRING	ORGLA08G0048400.1	1e-137	(Oryza glaberrima)
STRING	OBART08G05580.1	1e-137	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16558	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34720.1	3e-36	nuclear factor Y, subunit A4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]