PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G10700.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 218aa    MW: 23524.8 Da    PI: 11.352
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G10700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.2e-05160182123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ Cg+sFs+   L  H  +H
  OGLUM08G10700.1 160 FKCSVCGRSFSSYQALGGHKTSH 182
                      89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.03E-5159186No hitNo description
SMARTSM003550.0081160182IPR015880Zinc finger, C2H2-like
PfamPF139123.1E-12160183IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.78160187IPR007087Zinc finger, C2H2
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MRSAMIREDR GPTCQRGHVS TPSLSLSSPS SPFLLLLSLS LSLFSASRPV AGAKAARVRR  60
ERRRRRRQVA NGETEALHAA VLKEEEQQHE VEEAAVVTSS SATSGEEGGH LPQGWAKRKR  120
SRRQRSEEEN LALCLLMLAL GGHHRVQAPP PLSAPVGAEF KCSVCGRSFS SYQALGGHKT  180
SHRFKLPTPP ASPVLAPASS EVQSPLAFLP RNSAAARI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15865RRERRRRR
25866RRERRRRRR
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044580.0AP004458.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0045D08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3603930.0AY360393.2 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16, complete sequence.
GenBankAY3603940.0AY360394.1 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649250.18e-76zinc finger protein 1, partial
SwissprotQ424309e-37ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0E0ATN11e-152A0A0E0ATN1_9ORYZ; Uncharacterized protein
STRINGOGLUM08G10700.11e-152(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.19e-10zinc-finger protein 1