PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G12590.6
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 82aa    MW: 8782.01 Da    PI: 10.9225
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G12590.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like42.81.2e-133459126
          G2-like  1 kprlrWtpeLHerFveaveqLGGsek 26
                     kprlrWt +LH+rFv+av+qLGG++ 
  OGLUM08G12590.6 34 KPRLRWTADLHDRFVDAVAQLGGPDS 59
                     79*********************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-123160IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-93459IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MFPGLIHHHR LLDADVGGGG GGSSAGLVLT ADPKPRLRWT ADLHDRFVDA VAQLGGPDSH  60
RRQPPKVKKQ KFAQGSLLLS SH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043965e-94AP004396.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0404D10.
GenBankAP0044595e-94AP004459.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0410E11.
GenBankAP0149645e-94AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650961.12e-20protein PHR1-LIKE 3
TrEMBLA0A0E0AUD76e-51A0A0E0AUD7_9ORYZ; Uncharacterized protein
STRINGONIVA09G02600.11e-32(Oryza nivara)
STRINGOPUNC08G10730.16e-33(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.25e-14G2-like family protein